Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Gm16505-201ENSMUST00000179981 232 ntBASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Gm7118-201ENSMUST00000200167 1003 ntBASIC20.04■□□□□ 0.8
Scn4aQ9ER60 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Gm9368-201ENSMUST00000219348 831 ntBASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Scn4aQ9ER60 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Scn4aQ9ER60 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC20.03■□□□□ 0.8
Scn4aQ9ER60 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Scn4aQ9ER60 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Scn4aQ9ER60 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Scn4aQ9ER60 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Scn4aQ9ER60 AC123645.1-201ENSMUST00000228469 605 ntBASIC20.03■□□□□ 0.8
Scn4aQ9ER60 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Scn4aQ9ER60 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
Scn4aQ9ER60 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Scn4aQ9ER60 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Scn4aQ9ER60 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC20.02■□□□□ 0.8
Scn4aQ9ER60 CT030182.1-201ENSMUST00000225935 533 ntBASIC20.02■□□□□ 0.8
Scn4aQ9ER60 AC155237.1-201ENSMUST00000226196 1279 ntBASIC20.02■□□□□ 0.8
Scn4aQ9ER60 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Scn4aQ9ER60 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Scn4aQ9ER60 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Scn4aQ9ER60 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Scn4aQ9ER60 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Scn4aQ9ER60 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Scn4aQ9ER60 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Scn4aQ9ER60 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC20.02■□□□□ 0.8
Scn4aQ9ER60 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Scn4aQ9ER60 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
Scn4aQ9ER60 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Scn4aQ9ER60 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Scn4aQ9ER60 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Scn4aQ9ER60 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Scn4aQ9ER60 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Scn4aQ9ER60 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Scn4aQ9ER60 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Scn4aQ9ER60 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Scn4aQ9ER60 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Scn4aQ9ER60 B9d1os-201ENSMUST00000137010 674 ntBASIC20.01■□□□□ 0.79
Scn4aQ9ER60 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC20.01■□□□□ 0.79
Scn4aQ9ER60 Gm18473-201ENSMUST00000220543 868 ntBASIC20.01■□□□□ 0.79
Scn4aQ9ER60 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Scn4aQ9ER60 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Scn4aQ9ER60 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Scn4aQ9ER60 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Scn4aQ9ER60 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Scn4aQ9ER60 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Scn4aQ9ER60 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Scn4aQ9ER60 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC20■□□□□ 0.79
Scn4aQ9ER60 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Scn4aQ9ER60 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Scn4aQ9ER60 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Scn4aQ9ER60 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Scn4aQ9ER60 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Scn4aQ9ER60 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC20■□□□□ 0.79
Scn4aQ9ER60 Gm1335-201ENSMUST00000121653 386 ntBASIC20■□□□□ 0.79
Scn4aQ9ER60 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC20■□□□□ 0.79
Scn4aQ9ER60 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC20■□□□□ 0.79
Scn4aQ9ER60 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC20■□□□□ 0.79
Scn4aQ9ER60 Gm27320-201ENSMUST00000184892 109 ntBASIC20■□□□□ 0.79
Scn4aQ9ER60 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Scn4aQ9ER60 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Scn4aQ9ER60 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC20■□□□□ 0.79
Scn4aQ9ER60 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC20■□□□□ 0.79
Scn4aQ9ER60 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Scn4aQ9ER60 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Scn4aQ9ER60 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC20■□□□□ 0.79
Scn4aQ9ER60 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Scn4aQ9ER60 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC20■□□□□ 0.79
Scn4aQ9ER60 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Scn4aQ9ER60 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC20■□□□□ 0.79
Scn4aQ9ER60 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC20■□□□□ 0.79
Scn4aQ9ER60 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC20■□□□□ 0.79
Scn4aQ9ER60 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Gm37986-201ENSMUST00000193285 383 ntBASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 62.9 ms