Protein–RNA interactions for Protein: Q9DCB1

Hmgn3, High mobility group nucleosome-binding domain-containing protein 3, mousemouse

Predictions only

Length 99 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgn3Q9DCB1 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgn3Q9DCB1 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgn3Q9DCB1 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Hmgn3Q9DCB1 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgn3Q9DCB1 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgn3Q9DCB1 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgn3Q9DCB1 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgn3Q9DCB1 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Gm15565-201ENSMUST00000118890 427 ntBASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgn3Q9DCB1 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 AC134329.2-201ENSMUST00000217897 428 ntBASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgn3Q9DCB1 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgn3Q9DCB1 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgn3Q9DCB1 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgn3Q9DCB1 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgn3Q9DCB1 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgn3Q9DCB1 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgn3Q9DCB1 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgn3Q9DCB1 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgn3Q9DCB1 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgn3Q9DCB1 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgn3Q9DCB1 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgn3Q9DCB1 Gm42872-201ENSMUST00000200026 1967 ntBASIC14.02□□□□□ -0.16
Hmgn3Q9DCB1 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgn3Q9DCB1 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgn3Q9DCB1 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgn3Q9DCB1 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgn3Q9DCB1 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
Hmgn3Q9DCB1 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgn3Q9DCB1 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
Hmgn3Q9DCB1 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC14.02□□□□□ -0.17
Hmgn3Q9DCB1 Gm10252-201ENSMUST00000209541 832 ntBASIC14.02□□□□□ -0.17
Hmgn3Q9DCB1 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC14.02□□□□□ -0.17
Hmgn3Q9DCB1 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC14.02□□□□□ -0.17
Hmgn3Q9DCB1 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Hmgn3Q9DCB1 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC14.02□□□□□ -0.17
Hmgn3Q9DCB1 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Hmgn3Q9DCB1 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Hmgn3Q9DCB1 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Hmgn3Q9DCB1 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Hmgn3Q9DCB1 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Hmgn3Q9DCB1 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Hmgn3Q9DCB1 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Hmgn3Q9DCB1 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Hmgn3Q9DCB1 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms