Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trim60Q8VI40 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC15.47■□□□□ 0.07
Trim60Q8VI40 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim60Q8VI40 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim60Q8VI40 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim60Q8VI40 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trim60Q8VI40 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trim60Q8VI40 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC15.46■□□□□ 0.07
Trim60Q8VI40 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trim60Q8VI40 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Trim60Q8VI40 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trim60Q8VI40 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trim60Q8VI40 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trim60Q8VI40 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trim60Q8VI40 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trim60Q8VI40 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC15.46■□□□□ 0.07
Trim60Q8VI40 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC15.46■□□□□ 0.07
Trim60Q8VI40 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trim60Q8VI40 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
Trim60Q8VI40 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trim60Q8VI40 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trim60Q8VI40 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.06
Trim60Q8VI40 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.06
Trim60Q8VI40 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Trim60Q8VI40 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC15.46■□□□□ 0.06
Trim60Q8VI40 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim60Q8VI40 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC15.45■□□□□ 0.06
Trim60Q8VI40 AC151836.1-202ENSMUST00000226259 753 ntBASIC15.45■□□□□ 0.06
Trim60Q8VI40 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim60Q8VI40 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
Trim60Q8VI40 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim60Q8VI40 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC15.44■□□□□ 0.06
Trim60Q8VI40 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC15.44■□□□□ 0.06
Trim60Q8VI40 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC15.44■□□□□ 0.06
Trim60Q8VI40 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC15.44■□□□□ 0.06
Trim60Q8VI40 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim60Q8VI40 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC15.43■□□□□ 0.06
Trim60Q8VI40 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim60Q8VI40 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC15.43■□□□□ 0.06
Trim60Q8VI40 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim60Q8VI40 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim60Q8VI40 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim60Q8VI40 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim60Q8VI40 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim60Q8VI40 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Trim60Q8VI40 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC15.43■□□□□ 0.06
Trim60Q8VI40 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC15.43■□□□□ 0.06
Trim60Q8VI40 Gm37153-201ENSMUST00000193637 231 ntBASIC15.43■□□□□ 0.06
Trim60Q8VI40 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms