Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Syne4Q8CII8 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Syne4Q8CII8 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Syne4Q8CII8 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Syne4Q8CII8 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC16.83■□□□□ 0.28
Syne4Q8CII8 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC16.83■□□□□ 0.28
Syne4Q8CII8 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC16.83■□□□□ 0.28
Syne4Q8CII8 Gm45668-201ENSMUST00000211271 493 ntBASIC16.83■□□□□ 0.28
Syne4Q8CII8 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Syne4Q8CII8 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Syne4Q8CII8 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC16.83■□□□□ 0.28
Syne4Q8CII8 Ptprs-211ENSMUST00000223859 5588 ntBASIC16.83■□□□□ 0.28
Syne4Q8CII8 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Syne4Q8CII8 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Syne4Q8CII8 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Syne4Q8CII8 Gm15823-201ENSMUST00000064305 670 ntBASIC16.83■□□□□ 0.28
Syne4Q8CII8 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Syne4Q8CII8 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Syne4Q8CII8 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Syne4Q8CII8 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Syne4Q8CII8 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC16.83■□□□□ 0.28
Syne4Q8CII8 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Syne4Q8CII8 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Syne4Q8CII8 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC16.82■□□□□ 0.28
Syne4Q8CII8 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Gm6944-201ENSMUST00000182449 1006 ntBASIC16.82■□□□□ 0.28
Syne4Q8CII8 Gm8602-201ENSMUST00000184045 607 ntBASIC16.82■□□□□ 0.28
Syne4Q8CII8 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Gm7390-201ENSMUST00000212452 1216 ntBASIC16.82■□□□□ 0.28
Syne4Q8CII8 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Syne4Q8CII8 AC149588.3-201ENSMUST00000227515 150 ntBASIC16.82■□□□□ 0.28
Syne4Q8CII8 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Syne4Q8CII8 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Syne4Q8CII8 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Syne4Q8CII8 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Syne4Q8CII8 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Syne4Q8CII8 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Syne4Q8CII8 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Syne4Q8CII8 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Syne4Q8CII8 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Syne4Q8CII8 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Syne4Q8CII8 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Syne4Q8CII8 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC16.81■□□□□ 0.28
Syne4Q8CII8 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Syne4Q8CII8 Gm37748-201ENSMUST00000194379 1140 ntBASIC16.81■□□□□ 0.28
Syne4Q8CII8 Gm37917-201ENSMUST00000194711 392 ntBASIC16.81■□□□□ 0.28
Syne4Q8CII8 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Syne4Q8CII8 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC16.81■□□□□ 0.28
Syne4Q8CII8 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Syne4Q8CII8 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Syne4Q8CII8 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Syne4Q8CII8 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Syne4Q8CII8 Tcf21-202ENSMUST00000218002 1788 ntBASIC16.81■□□□□ 0.28
Syne4Q8CII8 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Syne4Q8CII8 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC16.81■□□□□ 0.28
Syne4Q8CII8 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Syne4Q8CII8 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Syne4Q8CII8 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Syne4Q8CII8 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Syne4Q8CII8 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Syne4Q8CII8 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Syne4Q8CII8 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
Syne4Q8CII8 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Syne4Q8CII8 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Syne4Q8CII8 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Syne4Q8CII8 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Syne4Q8CII8 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC16.8■□□□□ 0.28
Syne4Q8CII8 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Syne4Q8CII8 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Syne4Q8CII8 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC16.8■□□□□ 0.28
Syne4Q8CII8 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Syne4Q8CII8 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC16.8■□□□□ 0.28
Syne4Q8CII8 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Syne4Q8CII8 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Syne4Q8CII8 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Syne4Q8CII8 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Syne4Q8CII8 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC16.8■□□□□ 0.28
Syne4Q8CII8 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Syne4Q8CII8 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Syne4Q8CII8 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms