Protein–RNA interactions for Protein: Q8CI96

Clip4, CAP-Gly domain-containing linker protein 4, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clip4Q8CI96 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Clip4Q8CI96 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Clip4Q8CI96 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Clip4Q8CI96 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Clip4Q8CI96 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Clip4Q8CI96 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Clip4Q8CI96 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Clip4Q8CI96 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Clip4Q8CI96 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Clip4Q8CI96 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Clip4Q8CI96 Gm38058-201ENSMUST00000194323 4368 ntBASIC15.09■□□□□ 0.01
Clip4Q8CI96 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Clip4Q8CI96 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Clip4Q8CI96 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Clip4Q8CI96 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Clip4Q8CI96 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC15.09■□□□□ 0.01
Clip4Q8CI96 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Clip4Q8CI96 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Clip4Q8CI96 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
Clip4Q8CI96 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Clip4Q8CI96 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Clip4Q8CI96 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
Clip4Q8CI96 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Clip4Q8CI96 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Clip4Q8CI96 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
Clip4Q8CI96 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Clip4Q8CI96 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC15.08■□□□□ 0
Clip4Q8CI96 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC15.08■□□□□ 0
Clip4Q8CI96 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Clip4Q8CI96 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Clip4Q8CI96 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Clip4Q8CI96 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Clip4Q8CI96 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Clip4Q8CI96 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Clip4Q8CI96 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Clip4Q8CI96 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Clip4Q8CI96 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC15.08■□□□□ 0
Clip4Q8CI96 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Clip4Q8CI96 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Clip4Q8CI96 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Clip4Q8CI96 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Clip4Q8CI96 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clip4Q8CI96 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clip4Q8CI96 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Clip4Q8CI96 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clip4Q8CI96 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clip4Q8CI96 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC15.07■□□□□ 0
Clip4Q8CI96 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clip4Q8CI96 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clip4Q8CI96 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
Clip4Q8CI96 Gm11764-201ENSMUST00000120221 623 ntBASIC15.07■□□□□ 0
Clip4Q8CI96 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC15.07■□□□□ 0
Clip4Q8CI96 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC15.07■□□□□ 0
Clip4Q8CI96 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC15.07■□□□□ 0
Clip4Q8CI96 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC15.07■□□□□ 0
Clip4Q8CI96 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC15.07■□□□□ 0
Clip4Q8CI96 Gm5682-201ENSMUST00000173402 505 ntBASIC15.07■□□□□ 0
Clip4Q8CI96 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Clip4Q8CI96 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC15.07■□□□□ 0
Clip4Q8CI96 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Clip4Q8CI96 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC15.07■□□□□ 0
Clip4Q8CI96 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clip4Q8CI96 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC15.07■□□□□ 0
Clip4Q8CI96 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clip4Q8CI96 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC15.07■□□□□ 0
Clip4Q8CI96 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clip4Q8CI96 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
Clip4Q8CI96 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clip4Q8CI96 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
Clip4Q8CI96 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clip4Q8CI96 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clip4Q8CI96 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clip4Q8CI96 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC15.07■□□□□ 0
Clip4Q8CI96 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC15.07■□□□□ 0
Clip4Q8CI96 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clip4Q8CI96 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clip4Q8CI96 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clip4Q8CI96 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clip4Q8CI96 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Clip4Q8CI96 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Clip4Q8CI96 Gm37912-201ENSMUST00000191895 3076 ntBASIC15.06■□□□□ 0
Clip4Q8CI96 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clip4Q8CI96 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Clip4Q8CI96 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Clip4Q8CI96 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clip4Q8CI96 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clip4Q8CI96 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC15.06■□□□□ 0
Clip4Q8CI96 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC15.06■□□□□ 0
Clip4Q8CI96 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC15.06■□□□□ 0
Clip4Q8CI96 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC15.06■□□□□ 0
Clip4Q8CI96 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clip4Q8CI96 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC15.06■□□□□ 0
Clip4Q8CI96 Gm27628-201ENSMUST00000184911 107 ntBASIC15.06■□□□□ 0
Clip4Q8CI96 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC15.06■□□□□ 0
Clip4Q8CI96 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC15.06■□□□□ 0
Clip4Q8CI96 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clip4Q8CI96 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC15.06■□□□□ 0
Clip4Q8CI96 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC15.06■□□□□ 0
Clip4Q8CI96 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC15.06■□□□□ 0
Clip4Q8CI96 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 45.9 ms