Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim28Q62318 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim28Q62318 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim28Q62318 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim28Q62318 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC19.31■□□□□ 0.68
Trim28Q62318 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim28Q62318 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim28Q62318 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC19.31■□□□□ 0.68
Trim28Q62318 Gm14767-201ENSMUST00000121559 586 ntBASIC19.31■□□□□ 0.68
Trim28Q62318 Gm27631-201ENSMUST00000184163 466 ntBASIC19.31■□□□□ 0.68
Trim28Q62318 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trim28Q62318 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC19.31■□□□□ 0.68
Trim28Q62318 AC122335.2-201ENSMUST00000213901 6181 ntBASIC19.31■□□□□ 0.68
Trim28Q62318 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC19.31■□□□□ 0.68
Trim28Q62318 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim28Q62318 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim28Q62318 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trim28Q62318 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Trim28Q62318 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim28Q62318 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Trim28Q62318 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim28Q62318 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Trim28Q62318 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim28Q62318 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC19.3■□□□□ 0.68
Trim28Q62318 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim28Q62318 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim28Q62318 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
Trim28Q62318 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim28Q62318 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim28Q62318 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim28Q62318 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC19.3■□□□□ 0.68
Trim28Q62318 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Trim28Q62318 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim28Q62318 Gm16476-201ENSMUST00000221544 139 ntBASIC19.3■□□□□ 0.68
Trim28Q62318 AC090659.2-201ENSMUST00000225378 1186 ntBASIC19.3■□□□□ 0.68
Trim28Q62318 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim28Q62318 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim28Q62318 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim28Q62318 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim28Q62318 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim28Q62318 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Trim28Q62318 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim28Q62318 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim28Q62318 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim28Q62318 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim28Q62318 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim28Q62318 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC19.29■□□□□ 0.68
Trim28Q62318 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC19.29■□□□□ 0.68
Trim28Q62318 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC19.29■□□□□ 0.68
Trim28Q62318 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim28Q62318 Gm7063-201ENSMUST00000186840 981 ntBASIC19.29■□□□□ 0.68
Trim28Q62318 Gm44344-201ENSMUST00000200287 129 ntBASIC19.29■□□□□ 0.68
Trim28Q62318 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim28Q62318 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC19.29■□□□□ 0.68
Trim28Q62318 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim28Q62318 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim28Q62318 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Trim28Q62318 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim28Q62318 Gm13127-201ENSMUST00000118978 1389 ntBASIC19.29■□□□□ 0.68
Trim28Q62318 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC19.29■□□□□ 0.68
Trim28Q62318 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC19.28■□□□□ 0.68
Trim28Q62318 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim28Q62318 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim28Q62318 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim28Q62318 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Trim28Q62318 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim28Q62318 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Trim28Q62318 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trim28Q62318 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC19.28■□□□□ 0.68
Trim28Q62318 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim28Q62318 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim28Q62318 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim28Q62318 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim28Q62318 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC19.28■□□□□ 0.68
Trim28Q62318 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC19.28■□□□□ 0.68
Trim28Q62318 AC123645.1-201ENSMUST00000228469 605 ntBASIC19.28■□□□□ 0.68
Trim28Q62318 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Trim28Q62318 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC19.28■□□□□ 0.68
Trim28Q62318 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim28Q62318 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim28Q62318 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim28Q62318 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC19.28■□□□□ 0.68
Trim28Q62318 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim28Q62318 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim28Q62318 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim28Q62318 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim28Q62318 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim28Q62318 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim28Q62318 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
Trim28Q62318 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim28Q62318 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim28Q62318 AC174678.1-201ENSMUST00000228007 2749 ntBASIC19.27■□□□□ 0.68
Trim28Q62318 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trim28Q62318 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim28Q62318 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim28Q62318 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim28Q62318 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim28Q62318 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC19.27■□□□□ 0.68
Trim28Q62318 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trim28Q62318 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms