Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim27Q62158 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim27Q62158 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trim27Q62158 Mir7036b-201ENSMUST00000184791 63 ntBASIC18.33■□□□□ 0.52
Trim27Q62158 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC18.33■□□□□ 0.52
Trim27Q62158 Gm8597-201ENSMUST00000191525 1109 ntBASIC18.33■□□□□ 0.52
Trim27Q62158 AW822252-206ENSMUST00000208904 237 ntBASIC18.33■□□□□ 0.52
Trim27Q62158 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Trim27Q62158 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim27Q62158 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim27Q62158 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim27Q62158 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim27Q62158 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Trim27Q62158 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim27Q62158 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim27Q62158 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim27Q62158 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim27Q62158 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim27Q62158 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC18.33■□□□□ 0.52
Trim27Q62158 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim27Q62158 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim27Q62158 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim27Q62158 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
Trim27Q62158 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trim27Q62158 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim27Q62158 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim27Q62158 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim27Q62158 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim27Q62158 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Trim27Q62158 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC18.32■□□□□ 0.52
Trim27Q62158 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC18.32■□□□□ 0.52
Trim27Q62158 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC18.32■□□□□ 0.52
Trim27Q62158 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
Trim27Q62158 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC18.32■□□□□ 0.52
Trim27Q62158 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trim27Q62158 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC18.32■□□□□ 0.52
Trim27Q62158 Gm10154-201ENSMUST00000084445 354 ntBASIC18.32■□□□□ 0.52
Trim27Q62158 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim27Q62158 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim27Q62158 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim27Q62158 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Trim27Q62158 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim27Q62158 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trim27Q62158 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trim27Q62158 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim27Q62158 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Trim27Q62158 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim27Q62158 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim27Q62158 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim27Q62158 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim27Q62158 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim27Q62158 Gm12892-201ENSMUST00000117367 1146 ntBASIC18.31■□□□□ 0.52
Trim27Q62158 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim27Q62158 Gm16026-204ENSMUST00000162652 683 ntBASIC18.31■□□□□ 0.52
Trim27Q62158 Gm27301-201ENSMUST00000184012 127 ntBASIC18.31■□□□□ 0.52
Trim27Q62158 Gm44771-201ENSMUST00000206975 626 ntBASIC18.31■□□□□ 0.52
Trim27Q62158 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim27Q62158 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim27Q62158 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim27Q62158 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim27Q62158 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim27Q62158 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim27Q62158 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim27Q62158 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim27Q62158 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim27Q62158 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim27Q62158 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim27Q62158 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim27Q62158 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim27Q62158 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC18.3■□□□□ 0.52
Trim27Q62158 Gm27525-201ENSMUST00000184465 107 ntBASIC18.3■□□□□ 0.52
Trim27Q62158 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC18.3■□□□□ 0.52
Trim27Q62158 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim27Q62158 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC18.3■□□□□ 0.52
Trim27Q62158 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim27Q62158 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim27Q62158 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim27Q62158 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim27Q62158 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim27Q62158 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim27Q62158 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim27Q62158 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim27Q62158 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Trim27Q62158 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim27Q62158 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim27Q62158 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
Trim27Q62158 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC18.29■□□□□ 0.52
Trim27Q62158 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim27Q62158 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim27Q62158 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC18.29■□□□□ 0.52
Trim27Q62158 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim27Q62158 Gm9856-201ENSMUST00000217077 2578 ntBASIC18.29■□□□□ 0.52
Trim27Q62158 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC18.29■□□□□ 0.52
Trim27Q62158 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim27Q62158 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC18.29■□□□□ 0.52
Trim27Q62158 Gm8749-201ENSMUST00000117737 331 ntBASIC18.29■□□□□ 0.52
Trim27Q62158 Gm13464-201ENSMUST00000119418 935 ntBASIC18.29■□□□□ 0.52
Trim27Q62158 Gm23547-201ENSMUST00000158210 271 ntBASIC18.29■□□□□ 0.52
Trim27Q62158 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Trim27Q62158 Gm18206-201ENSMUST00000207027 926 ntBASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms