Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Col8a1Q00780 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Gm11478-201ENSMUST00000117851 599 ntBASIC12.74□□□□□ -0.37
Col8a1Q00780 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC12.74□□□□□ -0.37
Col8a1Q00780 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC12.74□□□□□ -0.37
Col8a1Q00780 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Gm15483-201ENSMUST00000120338 456 ntBASIC12.74□□□□□ -0.37
Col8a1Q00780 Gm14767-201ENSMUST00000121559 586 ntBASIC12.74□□□□□ -0.37
Col8a1Q00780 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC12.74□□□□□ -0.37
Col8a1Q00780 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Gm25144-201ENSMUST00000179561 110 ntBASIC12.74□□□□□ -0.37
Col8a1Q00780 Gm25352-201ENSMUST00000179815 110 ntBASIC12.74□□□□□ -0.37
Col8a1Q00780 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC12.74□□□□□ -0.37
Col8a1Q00780 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Col8a1Q00780 Gm7775-201ENSMUST00000218871 853 ntBASIC12.74□□□□□ -0.37
Col8a1Q00780 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC12.74□□□□□ -0.37
Col8a1Q00780 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Col8a1Q00780 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Gm36858-201ENSMUST00000194501 2391 ntBASIC12.74□□□□□ -0.37
Col8a1Q00780 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC12.74□□□□□ -0.37
Col8a1Q00780 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
Col8a1Q00780 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC12.73□□□□□ -0.37
Col8a1Q00780 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Col8a1Q00780 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Col8a1Q00780 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC12.73□□□□□ -0.37
Col8a1Q00780 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC12.73□□□□□ -0.37
Col8a1Q00780 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Col8a1Q00780 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Col8a1Q00780 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
Col8a1Q00780 Gm15321-201ENSMUST00000121290 288 ntBASIC12.73□□□□□ -0.37
Col8a1Q00780 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC12.73□□□□□ -0.37
Col8a1Q00780 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC12.73□□□□□ -0.37
Col8a1Q00780 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC12.73□□□□□ -0.37
Col8a1Q00780 Gm44719-201ENSMUST00000206404 149 ntBASIC12.73□□□□□ -0.37
Col8a1Q00780 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Col8a1Q00780 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
Col8a1Q00780 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col8a1Q00780 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Col8a1Q00780 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Col8a1Q00780 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col8a1Q00780 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col8a1Q00780 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col8a1Q00780 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Col8a1Q00780 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col8a1Q00780 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col8a1Q00780 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col8a1Q00780 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC12.72□□□□□ -0.37
Col8a1Q00780 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col8a1Q00780 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col8a1Q00780 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC12.72□□□□□ -0.37
Col8a1Q00780 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Col8a1Q00780 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Col8a1Q00780 Gm8318-201ENSMUST00000182954 872 ntBASIC12.72□□□□□ -0.37
Col8a1Q00780 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC12.72□□□□□ -0.37
Col8a1Q00780 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col8a1Q00780 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col8a1Q00780 Gm9899-201ENSMUST00000065519 555 ntBASIC12.72□□□□□ -0.37
Col8a1Q00780 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col8a1Q00780 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC12.72□□□□□ -0.37
Col8a1Q00780 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC12.72□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms