Protein–RNA interactions for Protein: P97952

Scn1b, Sodium channel subunit beta-1, mousemouse

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1bP97952 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Scn1bP97952 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Scn1bP97952 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC13.71□□□□□ -0.22
Scn1bP97952 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC13.71□□□□□ -0.22
Scn1bP97952 Gm19863-201ENSMUST00000192480 2218 ntBASIC13.71□□□□□ -0.22
Scn1bP97952 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Scn1bP97952 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
Scn1bP97952 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
Scn1bP97952 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Scn1bP97952 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Scn1bP97952 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 AC166574.6-201ENSMUST00000227889 1806 ntBASIC13.7□□□□□ -0.22
Scn1bP97952 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC13.7□□□□□ -0.22
Scn1bP97952 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 Gm22697-201ENSMUST00000175194 63 ntBASIC13.7□□□□□ -0.22
Scn1bP97952 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC13.7□□□□□ -0.22
Scn1bP97952 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Scn1bP97952 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
Scn1bP97952 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn1bP97952 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC13.69□□□□□ -0.22
Scn1bP97952 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC13.69□□□□□ -0.22
Scn1bP97952 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn1bP97952 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC13.68□□□□□ -0.22
Scn1bP97952 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Scn1bP97952 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Scn1bP97952 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
Scn1bP97952 Gm8668-201ENSMUST00000120559 1447 ntBASIC13.68□□□□□ -0.22
Scn1bP97952 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC13.68□□□□□ -0.22
Scn1bP97952 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Scn1bP97952 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
Scn1bP97952 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
Scn1bP97952 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC13.68□□□□□ -0.22
Scn1bP97952 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC13.68□□□□□ -0.22
Scn1bP97952 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC13.68□□□□□ -0.22
Scn1bP97952 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn1bP97952 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC13.68□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms