Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Gm12500-202ENSMUST00000186471 2428 ntBASIC12.28□□□□□ -0.44
Sdc1P18828 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC12.28□□□□□ -0.44
Sdc1P18828 Gm12933-201ENSMUST00000120203 872 ntBASIC12.28□□□□□ -0.44
Sdc1P18828 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC12.28□□□□□ -0.44
Sdc1P18828 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC12.28□□□□□ -0.44
Sdc1P18828 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC12.28□□□□□ -0.44
Sdc1P18828 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Timm23-208ENSMUST00000226683 750 ntBASIC12.28□□□□□ -0.44
Sdc1P18828 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Sdc1P18828 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Sdc1P18828 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC12.28□□□□□ -0.44
Sdc1P18828 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Sdc1P18828 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sdc1P18828 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sdc1P18828 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sdc1P18828 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
Sdc1P18828 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sdc1P18828 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sdc1P18828 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sdc1P18828 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sdc1P18828 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Sdc1P18828 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sdc1P18828 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sdc1P18828 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.45
Sdc1P18828 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Sdc1P18828 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC12.27□□□□□ -0.45
Sdc1P18828 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Sdc1P18828 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC12.27□□□□□ -0.45
Sdc1P18828 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sdc1P18828 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sdc1P18828 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Sdc1P18828 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Sdc1P18828 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sdc1P18828 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.45
Sdc1P18828 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sdc1P18828 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sdc1P18828 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sdc1P18828 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sdc1P18828 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sdc1P18828 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sdc1P18828 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Sdc1P18828 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sdc1P18828 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sdc1P18828 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC12.26□□□□□ -0.45
Sdc1P18828 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sdc1P18828 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sdc1P18828 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC12.26□□□□□ -0.45
Sdc1P18828 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC12.26□□□□□ -0.45
Sdc1P18828 Gm43195-201ENSMUST00000200614 2332 ntBASIC12.26□□□□□ -0.45
Sdc1P18828 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sdc1P18828 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC12.26□□□□□ -0.45
Sdc1P18828 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sdc1P18828 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sdc1P18828 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Sdc1P18828 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sdc1P18828 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC12.26□□□□□ -0.45
Sdc1P18828 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sdc1P18828 Gm14722-201ENSMUST00000118943 689 ntBASIC12.26□□□□□ -0.45
Sdc1P18828 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC12.26□□□□□ -0.45
Sdc1P18828 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC12.26□□□□□ -0.45
Sdc1P18828 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Sdc1P18828 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sdc1P18828 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Sdc1P18828 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sdc1P18828 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sdc1P18828 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sdc1P18828 Ssr1-204ENSMUST00000225319 1610 ntBASIC12.26□□□□□ -0.45
Sdc1P18828 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC12.25□□□□□ -0.45
Sdc1P18828 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sdc1P18828 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sdc1P18828 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Sdc1P18828 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Sdc1P18828 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sdc1P18828 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms