Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm37500-201ENSMUST00000192059 1443 ntBASIC16.19■□□□□ 0.18
RaraP11416 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RaraP11416 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RaraP11416 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RaraP11416 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC16.18■□□□□ 0.18
RaraP11416 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
RaraP11416 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
RaraP11416 Nupl1-207ENSMUST00000225311 2475 ntBASIC16.18■□□□□ 0.18
RaraP11416 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RaraP11416 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RaraP11416 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RaraP11416 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RaraP11416 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RaraP11416 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
RaraP11416 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RaraP11416 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
RaraP11416 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RaraP11416 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RaraP11416 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RaraP11416 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
RaraP11416 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RaraP11416 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RaraP11416 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RaraP11416 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RaraP11416 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RaraP11416 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RaraP11416 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
RaraP11416 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RaraP11416 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RaraP11416 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RaraP11416 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
RaraP11416 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC16.17■□□□□ 0.18
RaraP11416 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RaraP11416 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC16.17■□□□□ 0.18
RaraP11416 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RaraP11416 Gm27459-201ENSMUST00000184860 107 ntBASIC16.17■□□□□ 0.18
RaraP11416 Gm37153-201ENSMUST00000193637 231 ntBASIC16.17■□□□□ 0.18
RaraP11416 Gm43347-201ENSMUST00000200226 580 ntBASIC16.17■□□□□ 0.18
RaraP11416 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC16.17■□□□□ 0.18
RaraP11416 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC16.17■□□□□ 0.18
RaraP11416 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
RaraP11416 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RaraP11416 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RaraP11416 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
RaraP11416 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
RaraP11416 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RaraP11416 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
RaraP11416 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC16.16■□□□□ 0.18
RaraP11416 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
RaraP11416 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC16.16■□□□□ 0.18
RaraP11416 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC16.16■□□□□ 0.18
RaraP11416 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC16.16■□□□□ 0.18
RaraP11416 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC16.16■□□□□ 0.18
RaraP11416 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
RaraP11416 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RaraP11416 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
RaraP11416 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RaraP11416 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RaraP11416 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RaraP11416 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RaraP11416 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
RaraP11416 AC130669.1-201ENSMUST00000228537 1672 ntBASIC16.15■□□□□ 0.18
RaraP11416 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RaraP11416 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
RaraP11416 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RaraP11416 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
RaraP11416 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC16.15■□□□□ 0.18
RaraP11416 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC16.15■□□□□ 0.18
RaraP11416 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC16.15■□□□□ 0.18
RaraP11416 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
RaraP11416 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RaraP11416 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RaraP11416 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RaraP11416 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC16.15■□□□□ 0.18
RaraP11416 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
RaraP11416 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RaraP11416 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC16.15■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms