Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Mir6392-201ENSMUST00000184924 108 ntBASIC17.32■□□□□ 0.36
Col1a1P11087 Olfr286-202ENSMUST00000205305 969 ntBASIC17.32■□□□□ 0.36
Col1a1P11087 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col1a1P11087 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Col1a1P11087 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col1a1P11087 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col1a1P11087 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Col1a1P11087 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC17.32■□□□□ 0.36
Col1a1P11087 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Col1a1P11087 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col1a1P11087 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Col1a1P11087 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col1a1P11087 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Col1a1P11087 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC17.32■□□□□ 0.36
Col1a1P11087 Gm5763-201ENSMUST00000155951 1530 ntBASIC17.32■□□□□ 0.36
Col1a1P11087 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col1a1P11087 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col1a1P11087 Gm45412-201ENSMUST00000210217 2275 ntBASIC17.31■□□□□ 0.36
Col1a1P11087 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col1a1P11087 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC17.31■□□□□ 0.36
Col1a1P11087 AY702102-202ENSMUST00000194651 1173 ntBASIC17.31■□□□□ 0.36
Col1a1P11087 AC162801.1-201ENSMUST00000220612 198 ntBASIC17.31■□□□□ 0.36
Col1a1P11087 AC238811.3-201ENSMUST00000225422 709 ntBASIC17.31■□□□□ 0.36
Col1a1P11087 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col1a1P11087 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col1a1P11087 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col1a1P11087 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col1a1P11087 Gm5049-201ENSMUST00000195878 1590 ntBASIC17.31■□□□□ 0.36
Col1a1P11087 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col1a1P11087 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col1a1P11087 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col1a1P11087 Ccdc166-201ENSMUST00000182172 2584 ntBASIC17.31■□□□□ 0.36
Col1a1P11087 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col1a1P11087 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col1a1P11087 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC17.31■□□□□ 0.36
Col1a1P11087 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC17.31■□□□□ 0.36
Col1a1P11087 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC17.31■□□□□ 0.36
Col1a1P11087 Gm27701-201ENSMUST00000184498 110 ntBASIC17.31■□□□□ 0.36
Col1a1P11087 Gm43630-201ENSMUST00000201550 776 ntBASIC17.31■□□□□ 0.36
Col1a1P11087 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col1a1P11087 Gm5035-201ENSMUST00000215581 927 ntBASIC17.31■□□□□ 0.36
Col1a1P11087 AC159006.1-201ENSMUST00000226396 258 ntBASIC17.31■□□□□ 0.36
Col1a1P11087 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col1a1P11087 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Col1a1P11087 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col1a1P11087 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC17.3■□□□□ 0.36
Col1a1P11087 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Col1a1P11087 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col1a1P11087 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col1a1P11087 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col1a1P11087 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col1a1P11087 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col1a1P11087 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col1a1P11087 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col1a1P11087 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col1a1P11087 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC17.3■□□□□ 0.36
Col1a1P11087 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC17.3■□□□□ 0.36
Col1a1P11087 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col1a1P11087 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col1a1P11087 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Col1a1P11087 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col1a1P11087 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col1a1P11087 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC17.3■□□□□ 0.36
Col1a1P11087 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC17.3■□□□□ 0.36
Col1a1P11087 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC17.3■□□□□ 0.36
Col1a1P11087 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC17.3■□□□□ 0.36
Col1a1P11087 AC121804.3-201ENSMUST00000223420 295 ntBASIC17.3■□□□□ 0.36
Col1a1P11087 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC17.3■□□□□ 0.36
Col1a1P11087 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col1a1P11087 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col1a1P11087 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col1a1P11087 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col1a1P11087 BC001981-202ENSMUST00000191393 1545 ntBASIC17.29■□□□□ 0.36
Col1a1P11087 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col1a1P11087 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC17.29■□□□□ 0.36
Col1a1P11087 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col1a1P11087 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col1a1P11087 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col1a1P11087 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col1a1P11087 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col1a1P11087 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col1a1P11087 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col1a1P11087 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Col1a1P11087 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col1a1P11087 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col1a1P11087 Trav13-3-201ENSMUST00000117226 336 ntBASIC17.29■□□□□ 0.36
Col1a1P11087 Gm12585-201ENSMUST00000117307 290 ntBASIC17.29■□□□□ 0.36
Col1a1P11087 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col1a1P11087 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC17.29■□□□□ 0.36
Col1a1P11087 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col1a1P11087 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
Col1a1P11087 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col1a1P11087 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col1a1P11087 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col1a1P11087 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col1a1P11087 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col1a1P11087 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Col1a1P11087 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Col1a1P11087 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col1a1P11087 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 64.2 ms