Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lmx1bO88609 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lmx1bO88609 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lmx1bO88609 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Lmx1bO88609 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lmx1bO88609 Mir1895-201ENSMUST00000122615 79 ntBASIC13.55□□□□□ -0.24
Lmx1bO88609 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Lmx1bO88609 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC13.55□□□□□ -0.24
Lmx1bO88609 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lmx1bO88609 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lmx1bO88609 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Lmx1bO88609 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Lmx1bO88609 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Lmx1bO88609 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Lmx1bO88609 Gm13332-201ENSMUST00000120451 1398 ntBASIC13.55□□□□□ -0.24
Lmx1bO88609 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC13.55□□□□□ -0.24
Lmx1bO88609 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lmx1bO88609 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lmx1bO88609 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lmx1bO88609 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lmx1bO88609 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Lmx1bO88609 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lmx1bO88609 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lmx1bO88609 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lmx1bO88609 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Lmx1bO88609 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Lmx1bO88609 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC13.54□□□□□ -0.24
Lmx1bO88609 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC13.54□□□□□ -0.24
Lmx1bO88609 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
Lmx1bO88609 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
Lmx1bO88609 Gm11025-201ENSMUST00000140773 466 ntBASIC13.54□□□□□ -0.24
Lmx1bO88609 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Lmx1bO88609 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Lmx1bO88609 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
Lmx1bO88609 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Lmx1bO88609 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
Lmx1bO88609 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
Lmx1bO88609 Gm44335-201ENSMUST00000196879 141 ntBASIC13.53□□□□□ -0.24
Lmx1bO88609 Gm44297-201ENSMUST00000198304 141 ntBASIC13.53□□□□□ -0.24
Lmx1bO88609 Gm44346-201ENSMUST00000198851 141 ntBASIC13.53□□□□□ -0.24
Lmx1bO88609 Gm45612-201ENSMUST00000211320 160 ntBASIC13.53□□□□□ -0.24
Lmx1bO88609 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Lmx1bO88609 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Lmx1bO88609 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 AC174678.1-201ENSMUST00000228007 2749 ntBASIC13.53□□□□□ -0.24
Lmx1bO88609 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Lmx1bO88609 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lmx1bO88609 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Lmx1bO88609 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC13.52□□□□□ -0.24
Lmx1bO88609 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Lmx1bO88609 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Lmx1bO88609 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
Lmx1bO88609 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms