Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Prom1O54990 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Prom1O54990 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Prom1O54990 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Prom1O54990 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Prom1O54990 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Prom1O54990 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Prom1O54990 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Prom1O54990 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC16.43■□□□□ 0.22
Prom1O54990 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Prom1O54990 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Prom1O54990 Syt7-204ENSMUST00000223586 1344 ntBASIC16.43■□□□□ 0.22
Prom1O54990 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Prom1O54990 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
Prom1O54990 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC16.42■□□□□ 0.22
Prom1O54990 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC16.42■□□□□ 0.22
Prom1O54990 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Prom1O54990 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Prom1O54990 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Prom1O54990 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
Prom1O54990 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Prom1O54990 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC16.42■□□□□ 0.22
Prom1O54990 Gm27680-201ENSMUST00000184192 160 ntBASIC16.42■□□□□ 0.22
Prom1O54990 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC16.42■□□□□ 0.22
Prom1O54990 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Prom1O54990 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Prom1O54990 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Prom1O54990 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Prom1O54990 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Prom1O54990 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Prom1O54990 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Prom1O54990 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Prom1O54990 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Prom1O54990 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Prom1O54990 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Prom1O54990 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Prom1O54990 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Prom1O54990 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Prom1O54990 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Prom1O54990 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Prom1O54990 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC16.41■□□□□ 0.22
Prom1O54990 Gm6539-201ENSMUST00000119157 1064 ntBASIC16.41■□□□□ 0.22
Prom1O54990 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC16.41■□□□□ 0.22
Prom1O54990 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
Prom1O54990 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC16.41■□□□□ 0.22
Prom1O54990 Gm9719-201ENSMUST00000162765 543 ntBASIC16.41■□□□□ 0.22
Prom1O54990 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Prom1O54990 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Prom1O54990 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Prom1O54990 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC16.41■□□□□ 0.22
Prom1O54990 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Prom1O54990 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Prom1O54990 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Prom1O54990 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC16.4■□□□□ 0.22
Prom1O54990 Gm43195-201ENSMUST00000200614 2332 ntBASIC16.4■□□□□ 0.22
Prom1O54990 AC154231.1-201ENSMUST00000220564 2175 ntBASIC16.4■□□□□ 0.22
Prom1O54990 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Gm24543-201ENSMUST00000103867 82 ntBASIC16.4■□□□□ 0.22
Prom1O54990 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC16.4■□□□□ 0.22
Prom1O54990 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
Prom1O54990 Mir1897-201ENSMUST00000122581 272 ntBASIC16.4■□□□□ 0.22
Prom1O54990 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC16.4■□□□□ 0.22
Prom1O54990 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC16.4■□□□□ 0.22
Prom1O54990 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Prom1O54990 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Prom1O54990 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Prom1O54990 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
Prom1O54990 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.22
Prom1O54990 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Prom1O54990 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Prom1O54990 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Prom1O54990 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Prom1O54990 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Prom1O54990 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Prom1O54990 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Prom1O54990 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Prom1O54990 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms