Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Gm6184-201ENSMUST00000120403 1261 ntBASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 AC159093.1-201ENSMUST00000227779 380 ntBASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim3Q9R1R2 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Gm27628-201ENSMUST00000184911 107 ntBASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Gm11839-201ENSMUST00000120647 1953 ntBASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Trim3Q9R1R2 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Trim3Q9R1R2 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Trim3Q9R1R2 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Trim3Q9R1R2 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Gm7286-201ENSMUST00000182691 1007 ntBASIC14.08□□□□□ -0.16
Trim3Q9R1R2 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms