Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cpsf1Q9EPU4 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Cpsf1Q9EPU4 Wdyhv1-206ENSMUST00000227142 786 ntBASIC20.5■□□□□ 0.87
Cpsf1Q9EPU4 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cpsf1Q9EPU4 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cpsf1Q9EPU4 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cpsf1Q9EPU4 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cpsf1Q9EPU4 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cpsf1Q9EPU4 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cpsf1Q9EPU4 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 Gm12151-201ENSMUST00000121374 290 ntBASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Cpsf1Q9EPU4 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cpsf1Q9EPU4 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Cpsf1Q9EPU4 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cpsf1Q9EPU4 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Cpsf1Q9EPU4 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cpsf1Q9EPU4 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Cpsf1Q9EPU4 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cpsf1Q9EPU4 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Cpsf1Q9EPU4 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC20.48■□□□□ 0.87
Cpsf1Q9EPU4 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC20.48■□□□□ 0.87
Cpsf1Q9EPU4 Gm13517-201ENSMUST00000120782 1495 ntBASIC20.48■□□□□ 0.87
Cpsf1Q9EPU4 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Cpsf1Q9EPU4 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Cpsf1Q9EPU4 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cpsf1Q9EPU4 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Cpsf1Q9EPU4 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Cpsf1Q9EPU4 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Cpsf1Q9EPU4 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Gm6222-201ENSMUST00000120787 396 ntBASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Gm27437-201ENSMUST00000183429 107 ntBASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cpsf1Q9EPU4 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cpsf1Q9EPU4 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC20.46■□□□□ 0.87
Cpsf1Q9EPU4 Mir7684-201ENSMUST00000183858 60 ntBASIC20.46■□□□□ 0.87
Cpsf1Q9EPU4 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cpsf1Q9EPU4 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC20.46■□□□□ 0.87
Cpsf1Q9EPU4 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cpsf1Q9EPU4 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cpsf1Q9EPU4 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Cpsf1Q9EPU4 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cpsf1Q9EPU4 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cpsf1Q9EPU4 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cpsf1Q9EPU4 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Cpsf1Q9EPU4 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Cpsf1Q9EPU4 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cpsf1Q9EPU4 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cpsf1Q9EPU4 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cpsf1Q9EPU4 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cpsf1Q9EPU4 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cpsf1Q9EPU4 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cpsf1Q9EPU4 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
Cpsf1Q9EPU4 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC20.45■□□□□ 0.86
Cpsf1Q9EPU4 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cpsf1Q9EPU4 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cpsf1Q9EPU4 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC20.45■□□□□ 0.86
Cpsf1Q9EPU4 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Cpsf1Q9EPU4 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Cpsf1Q9EPU4 AC125206.2-201ENSMUST00000217454 574 ntBASIC20.45■□□□□ 0.86
Cpsf1Q9EPU4 Dupd1-202ENSMUST00000224735 548 ntBASIC20.45■□□□□ 0.86
Cpsf1Q9EPU4 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cpsf1Q9EPU4 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms