Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ccdc28bQ8CEG5 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ccdc28bQ8CEG5 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Gm6433-201ENSMUST00000118634 875 ntBASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Gm7286-201ENSMUST00000182691 1007 ntBASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Gm8242-201ENSMUST00000193029 1420 ntBASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc28bQ8CEG5 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Ntrk2-208ENSMUST00000225583 2719 ntBASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Gm5587-201ENSMUST00000206270 674 ntBASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Gm45328-201ENSMUST00000210942 917 ntBASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 AC127349.1-201ENSMUST00000224590 266 ntBASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc28bQ8CEG5 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Gm38391-201ENSMUST00000191720 4069 ntBASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 AC153794.1-201ENSMUST00000169148 126 ntBASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 AC117588.1-201ENSMUST00000228510 999 ntBASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc28bQ8CEG5 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms