Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf220Q6PDX6 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf220Q6PDX6 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf220Q6PDX6 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf220Q6PDX6 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf220Q6PDX6 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf220Q6PDX6 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf220Q6PDX6 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf220Q6PDX6 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf220Q6PDX6 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf220Q6PDX6 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf220Q6PDX6 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Gm42471-201ENSMUST00000201457 1865 ntBASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf220Q6PDX6 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Gm43799-201ENSMUST00000201845 579 ntBASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC14.22□□□□□ -0.13
Rnf220Q6PDX6 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 Gm27389-201ENSMUST00000183622 195 ntBASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC14.21□□□□□ -0.13
Rnf220Q6PDX6 Gm8668-201ENSMUST00000120559 1447 ntBASIC14.21□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms