Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
ShhQ62226 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
ShhQ62226 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
ShhQ62226 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
ShhQ62226 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
ShhQ62226 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
ShhQ62226 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
ShhQ62226 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
ShhQ62226 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
ShhQ62226 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
ShhQ62226 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
ShhQ62226 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
ShhQ62226 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
ShhQ62226 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
ShhQ62226 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
ShhQ62226 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
ShhQ62226 Gm5626-201ENSMUST00000222151 1058 ntBASIC13.97□□□□□ -0.17
ShhQ62226 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
ShhQ62226 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC13.97□□□□□ -0.17
ShhQ62226 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
ShhQ62226 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
ShhQ62226 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
ShhQ62226 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
ShhQ62226 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
ShhQ62226 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
ShhQ62226 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
ShhQ62226 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
ShhQ62226 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
ShhQ62226 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
ShhQ62226 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
ShhQ62226 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
ShhQ62226 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
ShhQ62226 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
ShhQ62226 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.17
ShhQ62226 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
ShhQ62226 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
ShhQ62226 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
ShhQ62226 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
ShhQ62226 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
ShhQ62226 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC13.96□□□□□ -0.17
ShhQ62226 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
ShhQ62226 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
ShhQ62226 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
ShhQ62226 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC13.96□□□□□ -0.17
ShhQ62226 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
ShhQ62226 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
ShhQ62226 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
ShhQ62226 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
ShhQ62226 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
ShhQ62226 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
ShhQ62226 Gm11424-201ENSMUST00000121929 829 ntBASIC13.96□□□□□ -0.17
ShhQ62226 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
ShhQ62226 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC13.96□□□□□ -0.17
ShhQ62226 Gm37153-201ENSMUST00000193637 231 ntBASIC13.96□□□□□ -0.17
ShhQ62226 Gm44335-201ENSMUST00000196879 141 ntBASIC13.96□□□□□ -0.17
ShhQ62226 Gm44297-201ENSMUST00000198304 141 ntBASIC13.96□□□□□ -0.17
ShhQ62226 Gm44346-201ENSMUST00000198851 141 ntBASIC13.96□□□□□ -0.17
ShhQ62226 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC13.96□□□□□ -0.17
ShhQ62226 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC13.96□□□□□ -0.17
ShhQ62226 Gm19164-201ENSMUST00000210667 640 ntBASIC13.96□□□□□ -0.17
ShhQ62226 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC13.96□□□□□ -0.17
ShhQ62226 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
ShhQ62226 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
ShhQ62226 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
ShhQ62226 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
ShhQ62226 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
ShhQ62226 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
ShhQ62226 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
ShhQ62226 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
ShhQ62226 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
ShhQ62226 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
ShhQ62226 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC13.96□□□□□ -0.18
ShhQ62226 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
ShhQ62226 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ShhQ62226 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC13.95□□□□□ -0.18
ShhQ62226 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
ShhQ62226 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ShhQ62226 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
ShhQ62226 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ShhQ62226 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ShhQ62226 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ShhQ62226 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ShhQ62226 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
ShhQ62226 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC13.95□□□□□ -0.18
ShhQ62226 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
ShhQ62226 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC13.95□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms