Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Limch1Q3UH68 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Limch1Q3UH68 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Limch1Q3UH68 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Limch1Q3UH68 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC17.62■□□□□ 0.41
Limch1Q3UH68 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Limch1Q3UH68 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC17.62■□□□□ 0.41
Limch1Q3UH68 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Limch1Q3UH68 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Limch1Q3UH68 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC17.61■□□□□ 0.41
Limch1Q3UH68 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC17.61■□□□□ 0.41
Limch1Q3UH68 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC17.61■□□□□ 0.41
Limch1Q3UH68 Gm37153-201ENSMUST00000193637 231 ntBASIC17.61■□□□□ 0.41
Limch1Q3UH68 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Gm44945-201ENSMUST00000206764 1187 ntBASIC17.61■□□□□ 0.41
Limch1Q3UH68 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Limch1Q3UH68 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
Limch1Q3UH68 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Limch1Q3UH68 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Limch1Q3UH68 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Limch1Q3UH68 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Limch1Q3UH68 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Limch1Q3UH68 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Limch1Q3UH68 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC17.6■□□□□ 0.41
Limch1Q3UH68 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC17.6■□□□□ 0.41
Limch1Q3UH68 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC17.6■□□□□ 0.41
Limch1Q3UH68 Gm45167-201ENSMUST00000208007 322 ntBASIC17.6■□□□□ 0.41
Limch1Q3UH68 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
Limch1Q3UH68 AC151836.1-202ENSMUST00000226259 753 ntBASIC17.6■□□□□ 0.41
Limch1Q3UH68 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Limch1Q3UH68 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Limch1Q3UH68 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Limch1Q3UH68 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC17.6■□□□□ 0.41
Limch1Q3UH68 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Limch1Q3UH68 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Limch1Q3UH68 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Limch1Q3UH68 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Limch1Q3UH68 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Limch1Q3UH68 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Limch1Q3UH68 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Limch1Q3UH68 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Limch1Q3UH68 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Limch1Q3UH68 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Limch1Q3UH68 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Limch1Q3UH68 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Limch1Q3UH68 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC17.59■□□□□ 0.41
Limch1Q3UH68 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Limch1Q3UH68 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC17.59■□□□□ 0.41
Limch1Q3UH68 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC17.59■□□□□ 0.41
Limch1Q3UH68 Gm7229-201ENSMUST00000214719 1007 ntBASIC17.59■□□□□ 0.41
Limch1Q3UH68 Gm15500-202ENSMUST00000071641 1019 ntBASIC17.59■□□□□ 0.41
Limch1Q3UH68 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Limch1Q3UH68 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC17.59■□□□□ 0.41
Limch1Q3UH68 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Limch1Q3UH68 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC17.59■□□□□ 0.41
Limch1Q3UH68 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Limch1Q3UH68 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Limch1Q3UH68 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Limch1Q3UH68 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Limch1Q3UH68 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Limch1Q3UH68 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC17.59■□□□□ 0.41
Limch1Q3UH68 Camk2g-217ENSMUST00000226630 1937 ntBASIC17.59■□□□□ 0.41
Limch1Q3UH68 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Limch1Q3UH68 Gm5184-201ENSMUST00000220417 1702 ntBASIC17.58■□□□□ 0.41
Limch1Q3UH68 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Limch1Q3UH68 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Limch1Q3UH68 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Limch1Q3UH68 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Limch1Q3UH68 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Limch1Q3UH68 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC17.58■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms