Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC18.89■□□□□ 0.61
Ddb1Q3U1J4 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ddb1Q3U1J4 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ddb1Q3U1J4 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Ddb1Q3U1J4 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
Ddb1Q3U1J4 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ddb1Q3U1J4 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 Gm13464-201ENSMUST00000119418 935 ntBASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 AC121804.3-201ENSMUST00000223420 295 ntBASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddb1Q3U1J4 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Gm27701-201ENSMUST00000184498 110 ntBASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Gm8242-201ENSMUST00000193029 1420 ntBASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Mir125a-201ENSMUST00000083545 68 ntBASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddb1Q3U1J4 Tfap2a-203ENSMUST00000223869 2037 ntBASIC18.86■□□□□ 0.61
Ddb1Q3U1J4 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ddb1Q3U1J4 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Ddb1Q3U1J4 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Ddb1Q3U1J4 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ddb1Q3U1J4 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ddb1Q3U1J4 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Ddb1Q3U1J4 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ddb1Q3U1J4 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Ddb1Q3U1J4 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ddb1Q3U1J4 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ddb1Q3U1J4 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC18.86■□□□□ 0.61
Ddb1Q3U1J4 AC154846.1-201ENSMUST00000226278 862 ntBASIC18.86■□□□□ 0.61
Ddb1Q3U1J4 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Ddb1Q3U1J4 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC18.86■□□□□ 0.61
Ddb1Q3U1J4 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Ddb1Q3U1J4 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ddb1Q3U1J4 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ddb1Q3U1J4 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Gm12742-201ENSMUST00000117326 410 ntBASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Mir1982-201ENSMUST00000157368 74 ntBASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Gm4691-201ENSMUST00000182339 1000 ntBASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Gm28911-201ENSMUST00000188837 117 ntBASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Gm2451-201ENSMUST00000199447 999 ntBASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Gm10290-201ENSMUST00000200451 999 ntBASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ddb1Q3U1J4 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddb1Q3U1J4 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ddb1Q3U1J4 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms