Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Shmt1P50431 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Shmt1P50431 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Shmt1P50431 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Shmt1P50431 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Shmt1P50431 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Shmt1P50431 AC131743.5-201ENSMUST00000220775 1618 ntBASIC15.82■□□□□ 0.12
Shmt1P50431 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Shmt1P50431 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Shmt1P50431 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Shmt1P50431 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Shmt1P50431 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Shmt1P50431 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Shmt1P50431 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Shmt1P50431 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Shmt1P50431 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Shmt1P50431 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Shmt1P50431 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Shmt1P50431 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
Shmt1P50431 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
Shmt1P50431 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Gm8597-201ENSMUST00000191525 1109 ntBASIC15.81■□□□□ 0.12
Shmt1P50431 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
Shmt1P50431 Gm5628-201ENSMUST00000222318 1049 ntBASIC15.81■□□□□ 0.12
Shmt1P50431 AC131187.1-201ENSMUST00000224567 809 ntBASIC15.81■□□□□ 0.12
Shmt1P50431 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC15.81■□□□□ 0.12
Shmt1P50431 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
Shmt1P50431 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Shmt1P50431 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
Shmt1P50431 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
Shmt1P50431 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Shmt1P50431 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
Shmt1P50431 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Shmt1P50431 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Shmt1P50431 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC15.8■□□□□ 0.12
Shmt1P50431 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
Shmt1P50431 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Shmt1P50431 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Shmt1P50431 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Shmt1P50431 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Shmt1P50431 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC15.8■□□□□ 0.12
Shmt1P50431 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
Shmt1P50431 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Shmt1P50431 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Shmt1P50431 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Shmt1P50431 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Shmt1P50431 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC15.8■□□□□ 0.12
Shmt1P50431 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC15.8■□□□□ 0.12
Shmt1P50431 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC15.8■□□□□ 0.12
Shmt1P50431 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC15.8■□□□□ 0.12
Shmt1P50431 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Shmt1P50431 Gm10313-201ENSMUST00000095320 1002 ntBASIC15.8■□□□□ 0.12
Shmt1P50431 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Shmt1P50431 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Shmt1P50431 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Shmt1P50431 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
Shmt1P50431 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Shmt1P50431 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Shmt1P50431 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Shmt1P50431 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Shmt1P50431 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Shmt1P50431 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Shmt1P50431 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Shmt1P50431 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Shmt1P50431 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Shmt1P50431 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Shmt1P50431 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Shmt1P50431 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Shmt1P50431 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Shmt1P50431 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Shmt1P50431 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC15.79■□□□□ 0.12
Shmt1P50431 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Shmt1P50431 Gm14701-201ENSMUST00000117156 348 ntBASIC15.79■□□□□ 0.12
Shmt1P50431 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC15.79■□□□□ 0.12
Shmt1P50431 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC15.79■□□□□ 0.12
Shmt1P50431 Gm15483-201ENSMUST00000120338 456 ntBASIC15.79■□□□□ 0.12
Shmt1P50431 Mir1895-201ENSMUST00000122615 79 ntBASIC15.79■□□□□ 0.12
Shmt1P50431 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC15.79■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms