Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Gm5253-201ENSMUST00000187104 1025 ntBASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 AC158982.1-201ENSMUST00000228377 901 ntBASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Ptprs-211ENSMUST00000223859 5588 ntBASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Gm17271-201ENSMUST00000165535 355 ntBASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Gm37153-201ENSMUST00000193637 231 ntBASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Gm45167-201ENSMUST00000208007 322 ntBASIC16.81■□□□□ 0.28
Ushbp1Q8R370 AC151836.1-202ENSMUST00000226259 753 ntBASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ushbp1Q8R370 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Gm9682-201ENSMUST00000197505 556 ntBASIC16.8■□□□□ 0.28
Ushbp1Q8R370 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Gm16425-201ENSMUST00000118143 3130 ntBASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC16.8■□□□□ 0.28
Ushbp1Q8R370 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC16.79■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms