Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Gm9727-201ENSMUST00000161387 555 ntBASIC14.81□□□□□ -0.04
Ubp1Q811S7 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Gm13294-201ENSMUST00000121757 1330 ntBASIC14.81□□□□□ -0.04
Ubp1Q811S7 AC119177.1-201ENSMUST00000227647 1332 ntBASIC14.81□□□□□ -0.04
Ubp1Q811S7 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ubp1Q811S7 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC14.8□□□□□ -0.04
Ubp1Q811S7 AC154412.1-201ENSMUST00000226540 2786 ntBASIC14.8□□□□□ -0.04
Ubp1Q811S7 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC14.8□□□□□ -0.04
Ubp1Q811S7 Gm13597-201ENSMUST00000121239 375 ntBASIC14.8□□□□□ -0.04
Ubp1Q811S7 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ubp1Q811S7 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC14.79□□□□□ -0.04
Ubp1Q811S7 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Ubp1Q811S7 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ubp1Q811S7 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
Ubp1Q811S7 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Ubp1Q811S7 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms