Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim56Q80VI1 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim56Q80VI1 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim56Q80VI1 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim56Q80VI1 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim56Q80VI1 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC17.69■□□□□ 0.42
Trim56Q80VI1 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim56Q80VI1 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim56Q80VI1 Gm13365-201ENSMUST00000121188 973 ntBASIC17.69■□□□□ 0.42
Trim56Q80VI1 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Trim56Q80VI1 AC131187.1-201ENSMUST00000224567 809 ntBASIC17.69■□□□□ 0.42
Trim56Q80VI1 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim56Q80VI1 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim56Q80VI1 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC17.69■□□□□ 0.42
Trim56Q80VI1 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC17.69■□□□□ 0.42
Trim56Q80VI1 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim56Q80VI1 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim56Q80VI1 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim56Q80VI1 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trim56Q80VI1 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim56Q80VI1 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim56Q80VI1 Gm13034-201ENSMUST00000121342 3177 ntBASIC17.69■□□□□ 0.42
Trim56Q80VI1 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim56Q80VI1 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim56Q80VI1 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim56Q80VI1 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC17.68■□□□□ 0.42
Trim56Q80VI1 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim56Q80VI1 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim56Q80VI1 AC174678.1-201ENSMUST00000228007 2749 ntBASIC17.68■□□□□ 0.42
Trim56Q80VI1 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC17.68■□□□□ 0.42
Trim56Q80VI1 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC17.68■□□□□ 0.42
Trim56Q80VI1 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC17.68■□□□□ 0.42
Trim56Q80VI1 Gm15483-201ENSMUST00000120338 456 ntBASIC17.68■□□□□ 0.42
Trim56Q80VI1 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC17.68■□□□□ 0.42
Trim56Q80VI1 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Trim56Q80VI1 Gm27494-201ENSMUST00000184735 189 ntBASIC17.68■□□□□ 0.42
Trim56Q80VI1 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim56Q80VI1 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC17.68■□□□□ 0.42
Trim56Q80VI1 Gm8096-201ENSMUST00000209921 1591 ntBASIC17.68■□□□□ 0.42
Trim56Q80VI1 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC17.68■□□□□ 0.42
Trim56Q80VI1 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim56Q80VI1 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim56Q80VI1 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC17.68■□□□□ 0.42
Trim56Q80VI1 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim56Q80VI1 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim56Q80VI1 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim56Q80VI1 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim56Q80VI1 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC17.68■□□□□ 0.42
Trim56Q80VI1 Tcf21-202ENSMUST00000218002 1788 ntBASIC17.68■□□□□ 0.42
Trim56Q80VI1 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Trim56Q80VI1 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim56Q80VI1 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC17.67■□□□□ 0.42
Trim56Q80VI1 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Gm5628-201ENSMUST00000222318 1049 ntBASIC17.67■□□□□ 0.42
Trim56Q80VI1 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Gm21009-201ENSMUST00000197169 1669 ntBASIC17.67■□□□□ 0.42
Trim56Q80VI1 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim56Q80VI1 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim56Q80VI1 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim56Q80VI1 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim56Q80VI1 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC17.66■□□□□ 0.42
Trim56Q80VI1 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim56Q80VI1 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim56Q80VI1 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim56Q80VI1 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim56Q80VI1 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim56Q80VI1 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim56Q80VI1 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC17.66■□□□□ 0.42
Trim56Q80VI1 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
Trim56Q80VI1 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Trim56Q80VI1 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim56Q80VI1 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim56Q80VI1 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms