Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim28Q62318 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim28Q62318 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim28Q62318 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim28Q62318 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Trim28Q62318 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim28Q62318 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC19.4■□□□□ 0.7
Trim28Q62318 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim28Q62318 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC19.4■□□□□ 0.7
Trim28Q62318 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim28Q62318 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
Trim28Q62318 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Trim28Q62318 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Trim28Q62318 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Trim28Q62318 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Trim28Q62318 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC19.39■□□□□ 0.69
Trim28Q62318 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim28Q62318 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim28Q62318 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim28Q62318 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
Trim28Q62318 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim28Q62318 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Trim28Q62318 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC19.39■□□□□ 0.69
Trim28Q62318 Gm9719-201ENSMUST00000162765 543 ntBASIC19.39■□□□□ 0.69
Trim28Q62318 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim28Q62318 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim28Q62318 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim28Q62318 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim28Q62318 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim28Q62318 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Trim28Q62318 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim28Q62318 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim28Q62318 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC19.39■□□□□ 0.69
Trim28Q62318 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim28Q62318 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim28Q62318 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim28Q62318 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim28Q62318 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim28Q62318 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim28Q62318 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC19.38■□□□□ 0.69
Trim28Q62318 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Trim28Q62318 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim28Q62318 Gm8410-201ENSMUST00000117225 605 ntBASIC19.38■□□□□ 0.69
Trim28Q62318 Gm12428-201ENSMUST00000119844 727 ntBASIC19.38■□□□□ 0.69
Trim28Q62318 Gm12151-201ENSMUST00000121374 290 ntBASIC19.38■□□□□ 0.69
Trim28Q62318 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Trim28Q62318 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim28Q62318 Gm17837-201ENSMUST00000186435 985 ntBASIC19.38■□□□□ 0.69
Trim28Q62318 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC19.38■□□□□ 0.69
Trim28Q62318 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Trim28Q62318 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Trim28Q62318 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim28Q62318 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
Trim28Q62318 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim28Q62318 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim28Q62318 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Trim28Q62318 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim28Q62318 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim28Q62318 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim28Q62318 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim28Q62318 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim28Q62318 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim28Q62318 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim28Q62318 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim28Q62318 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trim28Q62318 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim28Q62318 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim28Q62318 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim28Q62318 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Trim28Q62318 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim28Q62318 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim28Q62318 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Trim28Q62318 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Trim28Q62318 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC19.37■□□□□ 0.69
Trim28Q62318 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim28Q62318 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trim28Q62318 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trim28Q62318 Gm9063-201ENSMUST00000223299 582 ntBASIC19.37■□□□□ 0.69
Trim28Q62318 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trim28Q62318 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC19.37■□□□□ 0.69
Trim28Q62318 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim28Q62318 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim28Q62318 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim28Q62318 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim28Q62318 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim28Q62318 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Trim28Q62318 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim28Q62318 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim28Q62318 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim28Q62318 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Trim28Q62318 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Trim28Q62318 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Trim28Q62318 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Trim28Q62318 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
Trim28Q62318 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Trim28Q62318 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC19.36■□□□□ 0.69
Trim28Q62318 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC19.36■□□□□ 0.69
Trim28Q62318 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC19.36■□□□□ 0.69
Trim28Q62318 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim28Q62318 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC19.36■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 62.5 ms