Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usp28Q5I043 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Usp28Q5I043 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp28Q5I043 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usp28Q5I043 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp28Q5I043 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp28Q5I043 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp28Q5I043 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp28Q5I043 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Usp28Q5I043 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Usp28Q5I043 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Gm43347-201ENSMUST00000200226 580 ntBASIC17.06■□□□□ 0.32
Usp28Q5I043 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC17.06■□□□□ 0.32
Usp28Q5I043 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
Usp28Q5I043 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC17.06■□□□□ 0.32
Usp28Q5I043 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp28Q5I043 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp28Q5I043 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp28Q5I043 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Usp28Q5I043 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp28Q5I043 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp28Q5I043 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Usp28Q5I043 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp28Q5I043 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Usp28Q5I043 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp28Q5I043 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Usp28Q5I043 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Usp28Q5I043 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp28Q5I043 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC17.05■□□□□ 0.32
Usp28Q5I043 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Usp28Q5I043 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC17.05■□□□□ 0.32
Usp28Q5I043 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp28Q5I043 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp28Q5I043 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC17.05■□□□□ 0.32
Usp28Q5I043 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Usp28Q5I043 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp28Q5I043 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
Usp28Q5I043 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp28Q5I043 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp28Q5I043 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC17.05■□□□□ 0.32
Usp28Q5I043 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp28Q5I043 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Usp28Q5I043 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC17.05■□□□□ 0.32
Usp28Q5I043 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp28Q5I043 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp28Q5I043 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp28Q5I043 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp28Q5I043 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp28Q5I043 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Usp28Q5I043 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC17.04■□□□□ 0.32
Usp28Q5I043 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Usp28Q5I043 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC17.04■□□□□ 0.32
Usp28Q5I043 Ap5m1-205ENSMUST00000227431 3757 ntBASIC17.04■□□□□ 0.32
Usp28Q5I043 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Usp28Q5I043 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp28Q5I043 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp28Q5I043 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp28Q5I043 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC17.04■□□□□ 0.32
Usp28Q5I043 AC130669.1-201ENSMUST00000228537 1672 ntBASIC17.04■□□□□ 0.32
Usp28Q5I043 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp28Q5I043 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp28Q5I043 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp28Q5I043 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Usp28Q5I043 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Usp28Q5I043 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC17.03■□□□□ 0.32
Usp28Q5I043 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Usp28Q5I043 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Usp28Q5I043 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp28Q5I043 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp28Q5I043 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Usp28Q5I043 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC17.03■□□□□ 0.32
Usp28Q5I043 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC17.03■□□□□ 0.32
Usp28Q5I043 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp28Q5I043 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC17.03■□□□□ 0.32
Usp28Q5I043 Gm21362-201ENSMUST00000194272 928 ntBASIC17.03■□□□□ 0.32
Usp28Q5I043 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC17.03■□□□□ 0.32
Usp28Q5I043 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Usp28Q5I043 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp28Q5I043 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 49.9 ms