Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Upf3bQ3ULL6 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Upf3bQ3ULL6 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Upf3bQ3ULL6 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Gm30437-201ENSMUST00000206086 1201 ntBASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3bQ3ULL6 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Gm12008-201ENSMUST00000117791 755 ntBASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Gm27525-201ENSMUST00000184465 107 ntBASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Mir7036b-201ENSMUST00000184791 63 ntBASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 CT010506.4-201ENSMUST00000225457 351 ntBASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Upf3bQ3ULL6 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3bQ3ULL6 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3bQ3ULL6 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3bQ3ULL6 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3bQ3ULL6 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Upf3bQ3ULL6 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3bQ3ULL6 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3bQ3ULL6 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3bQ3ULL6 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3bQ3ULL6 Gm43767-201ENSMUST00000198933 381 ntBASIC16.04■□□□□ 0.16
Upf3bQ3ULL6 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC16.04■□□□□ 0.16
Upf3bQ3ULL6 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3bQ3ULL6 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3bQ3ULL6 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3bQ3ULL6 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3bQ3ULL6 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3bQ3ULL6 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3bQ3ULL6 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3bQ3ULL6 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3bQ3ULL6 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3bQ3ULL6 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms