Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 CT030657.3-201ENSMUST00000222707 1200 ntBASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Gm43072-201ENSMUST00000200283 1671 ntBASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Ldha-ps-201ENSMUST00000119390 995 ntBASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Tcf21-202ENSMUST00000218002 1788 ntBASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddb1Q3U1J4 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 AC238811.3-201ENSMUST00000225422 709 ntBASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddb1Q3U1J4 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 AC162801.1-201ENSMUST00000220612 198 ntBASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 AC166349.1-201ENSMUST00000220866 695 ntBASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddb1Q3U1J4 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddb1Q3U1J4 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Ddb1Q3U1J4 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddb1Q3U1J4 Gm4984-201ENSMUST00000115987 360 ntBASIC18.9■□□□□ 0.62
Ddb1Q3U1J4 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC18.9■□□□□ 0.62
Ddb1Q3U1J4 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddb1Q3U1J4 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddb1Q3U1J4 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddb1Q3U1J4 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddb1Q3U1J4 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddb1Q3U1J4 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddb1Q3U1J4 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddb1Q3U1J4 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Ddb1Q3U1J4 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC18.89■□□□□ 0.62
Ddb1Q3U1J4 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Ddb1Q3U1J4 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ddb1Q3U1J4 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Ddb1Q3U1J4 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC18.89■□□□□ 0.61
Ddb1Q3U1J4 Gm27892-201ENSMUST00000185017 106 ntBASIC18.89■□□□□ 0.61
Ddb1Q3U1J4 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC18.89■□□□□ 0.61
Ddb1Q3U1J4 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC18.89■□□□□ 0.61
Ddb1Q3U1J4 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC18.89■□□□□ 0.61
Ddb1Q3U1J4 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC18.89■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms