Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Msx1P13297 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC14.24□□□□□ -0.13
Msx1P13297 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC14.24□□□□□ -0.13
Msx1P13297 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Msx1P13297 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Msx1P13297 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC14.24□□□□□ -0.13
Msx1P13297 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC14.24□□□□□ -0.13
Msx1P13297 Gm44335-201ENSMUST00000196879 141 ntBASIC14.24□□□□□ -0.13
Msx1P13297 Gm44297-201ENSMUST00000198304 141 ntBASIC14.24□□□□□ -0.13
Msx1P13297 Gm44346-201ENSMUST00000198851 141 ntBASIC14.24□□□□□ -0.13
Msx1P13297 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC14.24□□□□□ -0.13
Msx1P13297 AC151836.1-202ENSMUST00000226259 753 ntBASIC14.24□□□□□ -0.13
Msx1P13297 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC14.24□□□□□ -0.13
Msx1P13297 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Msx1P13297 Grk6-207ENSMUST00000225925 2769 ntBASIC14.24□□□□□ -0.13
Msx1P13297 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Msx1P13297 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC14.24□□□□□ -0.13
Msx1P13297 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Msx1P13297 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC14.24□□□□□ -0.13
Msx1P13297 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Msx1P13297 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Msx1P13297 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Msx1P13297 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Msx1P13297 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Msx1P13297 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Msx1P13297 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Msx1P13297 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Msx1P13297 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Msx1P13297 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC14.23□□□□□ -0.13
Msx1P13297 AC154849.3-201ENSMUST00000223733 1660 ntBASIC14.23□□□□□ -0.13
Msx1P13297 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Msx1P13297 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Msx1P13297 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Msx1P13297 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Msx1P13297 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Msx1P13297 Gm5366-201ENSMUST00000215494 1338 ntBASIC14.23□□□□□ -0.13
Msx1P13297 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Msx1P13297 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Msx1P13297 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC14.23□□□□□ -0.13
Msx1P13297 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC14.23□□□□□ -0.13
Msx1P13297 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Msx1P13297 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Msx1P13297 Gm27301-201ENSMUST00000184012 127 ntBASIC14.23□□□□□ -0.13
Msx1P13297 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC14.23□□□□□ -0.13
Msx1P13297 Nrn1-204ENSMUST00000224323 1779 ntBASIC14.23□□□□□ -0.13
Msx1P13297 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Msx1P13297 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Msx1P13297 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Msx1P13297 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Msx1P13297 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Msx1P13297 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Msx1P13297 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Msx1P13297 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Msx1P13297 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC14.23□□□□□ -0.13
Msx1P13297 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Msx1P13297 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Msx1P13297 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Msx1P13297 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Msx1P13297 Gm44645-201ENSMUST00000205492 1653 ntBASIC14.23□□□□□ -0.13
Msx1P13297 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Msx1P13297 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC14.23□□□□□ -0.13
Msx1P13297 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Msx1P13297 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Msx1P13297 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Msx1P13297 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Msx1P13297 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Gm13332-201ENSMUST00000120451 1398 ntBASIC14.22□□□□□ -0.13
Msx1P13297 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC14.22□□□□□ -0.13
Msx1P13297 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Msx1P13297 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Msx1P13297 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Gm13365-201ENSMUST00000121188 973 ntBASIC14.22□□□□□ -0.13
Msx1P13297 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC14.22□□□□□ -0.13
Msx1P13297 AC131187.1-201ENSMUST00000224567 809 ntBASIC14.22□□□□□ -0.13
Msx1P13297 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Tfap2a-203ENSMUST00000223869 2037 ntBASIC14.22□□□□□ -0.13
Msx1P13297 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Msx1P13297 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC14.21□□□□□ -0.13
Msx1P13297 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 79 ms