Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Pcdh1F7BJK1 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Pcdh1F7BJK1 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Pcdh1F7BJK1 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Pcdh1F7BJK1 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Gm14859-201ENSMUST00000117752 357 ntBASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Gm15165-201ENSMUST00000118140 502 ntBASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Gm15358-201ENSMUST00000119249 520 ntBASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Gm12497-201ENSMUST00000138778 237 ntBASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Gm44291-201ENSMUST00000203102 2865 ntBASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Pcdh1F7BJK1 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Pcdh1F7BJK1 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Pcdh1F7BJK1 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.24
Pcdh1F7BJK1 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Pcdh1F7BJK1 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Pcdh1F7BJK1 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Pcdh1F7BJK1 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Pcdh1F7BJK1 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Pcdh1F7BJK1 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Pcdh1F7BJK1 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Gm27742-201ENSMUST00000184667 60 ntBASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Gm27704-201ENSMUST00000185094 107 ntBASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Gm7901-201ENSMUST00000120430 1597 ntBASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
Pcdh1F7BJK1 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Pcdh1F7BJK1 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC13.51□□□□□ -0.25
Pcdh1F7BJK1 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Pcdh1F7BJK1 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Pcdh1F7BJK1 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Pcdh1F7BJK1 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC13.51□□□□□ -0.25
Pcdh1F7BJK1 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Pcdh1F7BJK1 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
Pcdh1F7BJK1 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
Pcdh1F7BJK1 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Pcdh1F7BJK1 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Pcdh1F7BJK1 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Pcdh1F7BJK1 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Pcdh1F7BJK1 AC157650.3-201ENSMUST00000225058 1476 ntBASIC13.51□□□□□ -0.25
Pcdh1F7BJK1 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Pcdh1F7BJK1 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Pcdh1F7BJK1 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms