Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chd3B1AR17 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Chd3B1AR17 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chd3B1AR17 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chd3B1AR17 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chd3B1AR17 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Chd3B1AR17 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chd3B1AR17 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chd3B1AR17 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC14.68□□□□□ -0.06
Chd3B1AR17 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chd3B1AR17 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC14.68□□□□□ -0.06
Chd3B1AR17 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Chd3B1AR17 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chd3B1AR17 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
Chd3B1AR17 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Chd3B1AR17 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Chd3B1AR17 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chd3B1AR17 Gm25948-201ENSMUST00000175334 112 ntBASIC14.68□□□□□ -0.06
Chd3B1AR17 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Chd3B1AR17 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Chd3B1AR17 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chd3B1AR17 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Chd3B1AR17 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chd3B1AR17 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chd3B1AR17 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC14.68□□□□□ -0.06
Chd3B1AR17 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chd3B1AR17 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Chd3B1AR17 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm22065-201ENSMUST00000103753 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm22066-201ENSMUST00000103761 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm24932-201ENSMUST00000103763 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm24115-201ENSMUST00000103799 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm22190-201ENSMUST00000103827 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm22191-201ENSMUST00000103831 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm24721-201ENSMUST00000103849 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm28018-201ENSMUST00000103869 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm26399-201ENSMUST00000103937 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm16026-204ENSMUST00000162652 683 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 AA543401-201ENSMUST00000164248 1269 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm25349-201ENSMUST00000177728 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm23616-201ENSMUST00000177797 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm25871-201ENSMUST00000177816 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm24752-201ENSMUST00000178240 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm24496-201ENSMUST00000178287 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm25649-201ENSMUST00000178476 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm25548-201ENSMUST00000178681 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm23147-201ENSMUST00000178841 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm26095-201ENSMUST00000179270 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm22171-201ENSMUST00000179283 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm23936-201ENSMUST00000179354 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm22619-201ENSMUST00000179516 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm25255-201ENSMUST00000179579 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm24755-201ENSMUST00000179691 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm26506-201ENSMUST00000179692 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm25086-201ENSMUST00000179931 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm23243-201ENSMUST00000180047 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm24659-201ENSMUST00000180212 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm24169-201ENSMUST00000180244 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm23689-201ENSMUST00000180354 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm27359-201ENSMUST00000184153 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm27785-201ENSMUST00000184268 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm27466-201ENSMUST00000184396 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm27703-201ENSMUST00000184836 110 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC14.67□□□□□ -0.06
Chd3B1AR17 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm42918-201ENSMUST00000199249 1580 ntBASIC14.67□□□□□ -0.06
Chd3B1AR17 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC14.67□□□□□ -0.06
Chd3B1AR17 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Chd3B1AR17 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC14.66□□□□□ -0.06
Chd3B1AR17 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC14.66□□□□□ -0.06
Chd3B1AR17 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC14.66□□□□□ -0.06
Chd3B1AR17 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chd3B1AR17 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chd3B1AR17 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chd3B1AR17 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC14.66□□□□□ -0.06
Chd3B1AR17 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chd3B1AR17 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chd3B1AR17 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms