Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 Mxra8os-201ENSMUST00000097740 687 ntBASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 AC130669.1-201ENSMUST00000228537 1672 ntBASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ddx56Q9D0R4 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 AC084391.1-201ENSMUST00000200651 141 ntBASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 AC154527.4-201ENSMUST00000224364 1667 ntBASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 AC131709.1-201ENSMUST00000224731 1180 ntBASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Mzt1-203ENSMUST00000227948 952 ntBASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ddx56Q9D0R4 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Gm13294-201ENSMUST00000121757 1330 ntBASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 AC138767.1-201ENSMUST00000222661 415 ntBASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Gm10313-201ENSMUST00000095320 1002 ntBASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Efs-202ENSMUST00000227037 2540 ntBASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ddx56Q9D0R4 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Gm16425-201ENSMUST00000118143 3130 ntBASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 CT010506.4-201ENSMUST00000225457 351 ntBASIC15.79■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms