Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
RTRAFQ9CQE8 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
RTRAFQ9CQE8 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC12.27□□□□□ -0.44
RTRAFQ9CQE8 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
RTRAFQ9CQE8 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
RTRAFQ9CQE8 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
RTRAFQ9CQE8 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
RTRAFQ9CQE8 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
RTRAFQ9CQE8 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
RTRAFQ9CQE8 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
RTRAFQ9CQE8 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
RTRAFQ9CQE8 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
RTRAFQ9CQE8 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
RTRAFQ9CQE8 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
RTRAFQ9CQE8 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
RTRAFQ9CQE8 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
RTRAFQ9CQE8 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
RTRAFQ9CQE8 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
RTRAFQ9CQE8 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
RTRAFQ9CQE8 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC12.27□□□□□ -0.45
RTRAFQ9CQE8 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
RTRAFQ9CQE8 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.45
RTRAFQ9CQE8 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
RTRAFQ9CQE8 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC12.27□□□□□ -0.45
RTRAFQ9CQE8 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
RTRAFQ9CQE8 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Gm43353-201ENSMUST00000199224 1295 ntBASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Gm43509-201ENSMUST00000196551 2594 ntBASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RTRAFQ9CQE8 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Gm21451-201ENSMUST00000111062 2775 ntBASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms