Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rpa1Q8VEE4 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rpa1Q8VEE4 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rpa1Q8VEE4 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rpa1Q8VEE4 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Rpa1Q8VEE4 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rpa1Q8VEE4 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Gm13836-201ENSMUST00000121159 501 ntBASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Gm25406-201ENSMUST00000157599 105 ntBASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Gm18101-201ENSMUST00000215769 548 ntBASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 AC121577.1-201ENSMUST00000227302 707 ntBASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rpa1Q8VEE4 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Gm9856-201ENSMUST00000217077 2578 ntBASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Gm22697-201ENSMUST00000175194 63 ntBASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Rpa1Q8VEE4 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Mir770-201ENSMUST00000103252 94 ntBASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Gm1818-201ENSMUST00000169406 1184 ntBASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Gm10231-201ENSMUST00000181584 441 ntBASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Gm42790-201ENSMUST00000201268 969 ntBASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Gm10175-202ENSMUST00000208752 441 ntBASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 AC125350.1-201ENSMUST00000225115 903 ntBASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 AC130713.1-201ENSMUST00000228853 1096 ntBASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Rpa1Q8VEE4 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 56.6 ms