Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Gm14701-201ENSMUST00000117156 348 ntBASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ushbp1Q8R370 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Gm5357-201ENSMUST00000212720 1924 ntBASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Gm10499-201ENSMUST00000174094 934 ntBASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC16.84■□□□□ 0.29
Ushbp1Q8R370 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ushbp1Q8R370 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Ushbp1Q8R370 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
Ushbp1Q8R370 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
Ushbp1Q8R370 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Ushbp1Q8R370 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.29
Ushbp1Q8R370 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Gm11764-201ENSMUST00000120221 623 ntBASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Gm44945-201ENSMUST00000206764 1187 ntBASIC16.83■□□□□ 0.28
Ushbp1Q8R370 AC131709.1-201ENSMUST00000224731 1180 ntBASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ushbp1Q8R370 Gm43598-201ENSMUST00000202482 2479 ntBASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ushbp1Q8R370 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms