Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp47Q8BY87 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
Usp47Q8BY87 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Usp47Q8BY87 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp47Q8BY87 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp47Q8BY87 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Usp47Q8BY87 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
Usp47Q8BY87 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp47Q8BY87 Mir449b-201ENSMUST00000104833 80 ntBASIC21.16■□□□□ 0.98
Usp47Q8BY87 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp47Q8BY87 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC21.16■□□□□ 0.98
Usp47Q8BY87 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC21.16■□□□□ 0.98
Usp47Q8BY87 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp47Q8BY87 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC21.16■□□□□ 0.98
Usp47Q8BY87 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp47Q8BY87 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp47Q8BY87 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp47Q8BY87 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC21.16■□□□□ 0.98
Usp47Q8BY87 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp47Q8BY87 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp47Q8BY87 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Usp47Q8BY87 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp47Q8BY87 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp47Q8BY87 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp47Q8BY87 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp47Q8BY87 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Usp47Q8BY87 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp47Q8BY87 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp47Q8BY87 Gm13015-201ENSMUST00000118674 204 ntBASIC21.15■□□□□ 0.98
Usp47Q8BY87 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Usp47Q8BY87 AC140397.2-201ENSMUST00000224213 834 ntBASIC21.15■□□□□ 0.98
Usp47Q8BY87 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp47Q8BY87 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
Usp47Q8BY87 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp47Q8BY87 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp47Q8BY87 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC21.15■□□□□ 0.98
Usp47Q8BY87 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp47Q8BY87 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp47Q8BY87 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp47Q8BY87 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Usp47Q8BY87 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp47Q8BY87 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Usp47Q8BY87 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Usp47Q8BY87 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Usp47Q8BY87 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Usp47Q8BY87 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Usp47Q8BY87 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC21.14■□□□□ 0.98
Usp47Q8BY87 Gm10253-201ENSMUST00000194270 940 ntBASIC21.14■□□□□ 0.98
Usp47Q8BY87 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Usp47Q8BY87 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usp47Q8BY87 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Usp47Q8BY87 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Usp47Q8BY87 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usp47Q8BY87 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usp47Q8BY87 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Usp47Q8BY87 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Usp47Q8BY87 Trav13-3-201ENSMUST00000117226 336 ntBASIC21.13■□□□□ 0.97
Usp47Q8BY87 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC21.13■□□□□ 0.97
Usp47Q8BY87 Gm29541-201ENSMUST00000191351 678 ntBASIC21.13■□□□□ 0.97
Usp47Q8BY87 Gm7774-201ENSMUST00000200064 533 ntBASIC21.13■□□□□ 0.97
Usp47Q8BY87 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp47Q8BY87 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp47Q8BY87 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp47Q8BY87 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Usp47Q8BY87 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp47Q8BY87 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp47Q8BY87 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp47Q8BY87 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Usp47Q8BY87 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Usp47Q8BY87 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC21.13■□□□□ 0.97
Usp47Q8BY87 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp47Q8BY87 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp47Q8BY87 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Usp47Q8BY87 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp47Q8BY87 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp47Q8BY87 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp47Q8BY87 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp47Q8BY87 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp47Q8BY87 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp47Q8BY87 Gm5479-201ENSMUST00000160578 435 ntBASIC21.12■□□□□ 0.97
Usp47Q8BY87 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp47Q8BY87 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp47Q8BY87 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp47Q8BY87 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Usp47Q8BY87 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Usp47Q8BY87 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp47Q8BY87 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp47Q8BY87 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp47Q8BY87 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Usp47Q8BY87 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp47Q8BY87 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Usp47Q8BY87 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Usp47Q8BY87 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp47Q8BY87 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp47Q8BY87 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC21.12■□□□□ 0.97
Usp47Q8BY87 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp47Q8BY87 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp47Q8BY87 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Usp47Q8BY87 Gm8749-201ENSMUST00000117737 331 ntBASIC21.11■□□□□ 0.97
Usp47Q8BY87 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC21.11■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 46.7 ms