Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp40Q8BWR4 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp40Q8BWR4 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp40Q8BWR4 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
Usp40Q8BWR4 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC20.55■□□□□ 0.88
Usp40Q8BWR4 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp40Q8BWR4 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp40Q8BWR4 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp40Q8BWR4 Gm13453-201ENSMUST00000118708 357 ntBASIC20.55■□□□□ 0.88
Usp40Q8BWR4 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Usp40Q8BWR4 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC20.55■□□□□ 0.88
Usp40Q8BWR4 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Usp40Q8BWR4 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp40Q8BWR4 Gm43195-201ENSMUST00000200614 2332 ntBASIC20.55■□□□□ 0.88
Usp40Q8BWR4 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp40Q8BWR4 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp40Q8BWR4 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp40Q8BWR4 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp40Q8BWR4 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp40Q8BWR4 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Usp40Q8BWR4 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Usp40Q8BWR4 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp40Q8BWR4 AC133083.1-201ENSMUST00000221736 2209 ntBASIC20.54■□□□□ 0.88
Usp40Q8BWR4 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp40Q8BWR4 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Usp40Q8BWR4 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC20.54■□□□□ 0.88
Usp40Q8BWR4 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Usp40Q8BWR4 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC20.54■□□□□ 0.88
Usp40Q8BWR4 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Usp40Q8BWR4 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp40Q8BWR4 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Usp40Q8BWR4 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp40Q8BWR4 Gm6539-201ENSMUST00000119157 1064 ntBASIC20.54■□□□□ 0.88
Usp40Q8BWR4 Gm12428-201ENSMUST00000119844 727 ntBASIC20.54■□□□□ 0.88
Usp40Q8BWR4 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC20.54■□□□□ 0.88
Usp40Q8BWR4 Gm27989-201ENSMUST00000184721 107 ntBASIC20.54■□□□□ 0.88
Usp40Q8BWR4 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp40Q8BWR4 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp40Q8BWR4 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Usp40Q8BWR4 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC20.54■□□□□ 0.88
Usp40Q8BWR4 Gm11839-201ENSMUST00000120647 1953 ntBASIC20.54■□□□□ 0.88
Usp40Q8BWR4 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp40Q8BWR4 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC20.53■□□□□ 0.88
Usp40Q8BWR4 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp40Q8BWR4 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp40Q8BWR4 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
Usp40Q8BWR4 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Usp40Q8BWR4 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC20.53■□□□□ 0.88
Usp40Q8BWR4 Gm13823-201ENSMUST00000119930 345 ntBASIC20.53■□□□□ 0.88
Usp40Q8BWR4 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC20.53■□□□□ 0.88
Usp40Q8BWR4 Gm25144-201ENSMUST00000179561 110 ntBASIC20.53■□□□□ 0.88
Usp40Q8BWR4 Gm25352-201ENSMUST00000179815 110 ntBASIC20.53■□□□□ 0.88
Usp40Q8BWR4 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC20.53■□□□□ 0.88
Usp40Q8BWR4 Wdyhv1-206ENSMUST00000227142 786 ntBASIC20.53■□□□□ 0.88
Usp40Q8BWR4 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp40Q8BWR4 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp40Q8BWR4 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp40Q8BWR4 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Usp40Q8BWR4 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp40Q8BWR4 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp40Q8BWR4 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp40Q8BWR4 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC20.52■□□□□ 0.88
Usp40Q8BWR4 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp40Q8BWR4 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp40Q8BWR4 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC20.52■□□□□ 0.88
Usp40Q8BWR4 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp40Q8BWR4 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp40Q8BWR4 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp40Q8BWR4 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Usp40Q8BWR4 Gm6756-201ENSMUST00000180647 1620 ntBASIC20.52■□□□□ 0.88
Usp40Q8BWR4 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Usp40Q8BWR4 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
Usp40Q8BWR4 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Usp40Q8BWR4 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC20.52■□□□□ 0.87
Usp40Q8BWR4 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp40Q8BWR4 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp40Q8BWR4 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp40Q8BWR4 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Usp40Q8BWR4 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Usp40Q8BWR4 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp40Q8BWR4 Gm13464-201ENSMUST00000119418 935 ntBASIC20.51■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 52.7 ms