Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Gm5867-201ENSMUST00000063197 592 ntBASIC17.73■□□□□ 0.43
Trim56Q80VI1 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Mxra8os-201ENSMUST00000097740 687 ntBASIC17.73■□□□□ 0.43
Trim56Q80VI1 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
Trim56Q80VI1 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC17.73■□□□□ 0.43
Trim56Q80VI1 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Sybu-209ENSMUST00000228639 4113 ntBASIC17.72■□□□□ 0.43
Trim56Q80VI1 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Gm8597-201ENSMUST00000191525 1109 ntBASIC17.72■□□□□ 0.43
Trim56Q80VI1 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC17.72■□□□□ 0.43
Trim56Q80VI1 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Gm10584-201ENSMUST00000207036 2628 ntBASIC17.72■□□□□ 0.43
Trim56Q80VI1 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Gm16425-201ENSMUST00000118143 3130 ntBASIC17.72■□□□□ 0.43
Trim56Q80VI1 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim56Q80VI1 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Gm11745-201ENSMUST00000121669 448 ntBASIC17.71■□□□□ 0.43
Trim56Q80VI1 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Gm6736-201ENSMUST00000166583 948 ntBASIC17.71■□□□□ 0.43
Trim56Q80VI1 AC151286.1-201ENSMUST00000198489 145 ntBASIC17.71■□□□□ 0.43
Trim56Q80VI1 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Chchd1-203ENSMUST00000224633 557 ntBASIC17.71■□□□□ 0.43
Trim56Q80VI1 CT030684.1-201ENSMUST00000227292 914 ntBASIC17.71■□□□□ 0.43
Trim56Q80VI1 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim56Q80VI1 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Trim56Q80VI1 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
Trim56Q80VI1 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
Trim56Q80VI1 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Trim56Q80VI1 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim56Q80VI1 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim56Q80VI1 Gm13332-201ENSMUST00000120451 1398 ntBASIC17.7■□□□□ 0.42
Trim56Q80VI1 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC17.7■□□□□ 0.42
Trim56Q80VI1 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Trim56Q80VI1 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim56Q80VI1 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim56Q80VI1 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC17.7■□□□□ 0.42
Trim56Q80VI1 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC17.7■□□□□ 0.42
Trim56Q80VI1 Gpr146-202ENSMUST00000053120 1040 ntBASIC17.7■□□□□ 0.42
Trim56Q80VI1 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Trim56Q80VI1 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
Trim56Q80VI1 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim56Q80VI1 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim56Q80VI1 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
Trim56Q80VI1 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim56Q80VI1 Nrn1-204ENSMUST00000224323 1779 ntBASIC17.7■□□□□ 0.42
Trim56Q80VI1 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim56Q80VI1 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim56Q80VI1 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trim56Q80VI1 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim56Q80VI1 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms