Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Ift88Q61371 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ift88Q61371 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ift88Q61371 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
Ift88Q61371 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ift88Q61371 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ift88Q61371 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ift88Q61371 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Ift88Q61371 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ift88Q61371 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ift88Q61371 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ift88Q61371 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Ift88Q61371 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC16.67■□□□□ 0.26
Ift88Q61371 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
Ift88Q61371 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 AC148324.1-201ENSMUST00000219034 4240 ntBASIC16.67■□□□□ 0.26
Ift88Q61371 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Ift88Q61371 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC16.67■□□□□ 0.26
Ift88Q61371 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC16.67■□□□□ 0.26
Ift88Q61371 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC16.67■□□□□ 0.26
Ift88Q61371 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ift88Q61371 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ift88Q61371 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ift88Q61371 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ift88Q61371 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ift88Q61371 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ift88Q61371 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Ift88Q61371 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ift88Q61371 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC16.66■□□□□ 0.26
Ift88Q61371 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ift88Q61371 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ift88Q61371 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ift88Q61371 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Ift88Q61371 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ift88Q61371 Gm12644-201ENSMUST00000119935 606 ntBASIC16.66■□□□□ 0.26
Ift88Q61371 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ift88Q61371 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ift88Q61371 Gm33142-201ENSMUST00000193913 867 ntBASIC16.66■□□□□ 0.26
Ift88Q61371 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ift88Q61371 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Ift88Q61371 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ift88Q61371 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ift88Q61371 Gm37297-201ENSMUST00000192974 2384 ntBASIC16.66■□□□□ 0.26
Ift88Q61371 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ift88Q61371 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
Ift88Q61371 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ift88Q61371 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ift88Q61371 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ift88Q61371 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC16.66■□□□□ 0.26
Ift88Q61371 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ift88Q61371 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC16.65■□□□□ 0.26
Ift88Q61371 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
Ift88Q61371 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ift88Q61371 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Ift88Q61371 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ift88Q61371 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ift88Q61371 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ift88Q61371 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ift88Q61371 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Ift88Q61371 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Ift88Q61371 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Ift88Q61371 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ift88Q61371 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC16.65■□□□□ 0.26
Ift88Q61371 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC16.65■□□□□ 0.26
Ift88Q61371 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC16.65■□□□□ 0.26
Ift88Q61371 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ift88Q61371 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC16.65■□□□□ 0.26
Ift88Q61371 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ift88Q61371 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ift88Q61371 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC16.65■□□□□ 0.26
Ift88Q61371 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ift88Q61371 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ift88Q61371 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC16.65■□□□□ 0.26
Ift88Q61371 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ift88Q61371 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Ift88Q61371 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Ift88Q61371 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Ift88Q61371 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ift88Q61371 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ift88Q61371 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 66.1 ms