Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col6a1Q04857 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC16.61■□□□□ 0.25
Col6a1Q04857 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col6a1Q04857 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC16.61■□□□□ 0.25
Col6a1Q04857 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC16.61■□□□□ 0.25
Col6a1Q04857 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col6a1Q04857 AC130829.1-201ENSMUST00000221548 494 ntBASIC16.61■□□□□ 0.25
Col6a1Q04857 Gm6888-201ENSMUST00000221983 706 ntBASIC16.61■□□□□ 0.25
Col6a1Q04857 AC132467.2-202ENSMUST00000227726 559 ntBASIC16.61■□□□□ 0.25
Col6a1Q04857 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col6a1Q04857 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC16.61■□□□□ 0.25
Col6a1Q04857 Gm10154-201ENSMUST00000084445 354 ntBASIC16.61■□□□□ 0.25
Col6a1Q04857 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col6a1Q04857 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col6a1Q04857 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col6a1Q04857 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Col6a1Q04857 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC16.61■□□□□ 0.25
Col6a1Q04857 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col6a1Q04857 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col6a1Q04857 AC124751.1-201ENSMUST00000222716 1408 ntBASIC16.61■□□□□ 0.25
Col6a1Q04857 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC16.61■□□□□ 0.25
Col6a1Q04857 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col6a1Q04857 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col6a1Q04857 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col6a1Q04857 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Col6a1Q04857 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col6a1Q04857 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col6a1Q04857 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col6a1Q04857 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC16.6■□□□□ 0.25
Col6a1Q04857 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
Col6a1Q04857 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Col6a1Q04857 Gm12490-201ENSMUST00000120255 560 ntBASIC16.6■□□□□ 0.25
Col6a1Q04857 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC16.6■□□□□ 0.25
Col6a1Q04857 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC16.6■□□□□ 0.25
Col6a1Q04857 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Col6a1Q04857 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC16.6■□□□□ 0.25
Col6a1Q04857 Gm43433-201ENSMUST00000196573 481 ntBASIC16.6■□□□□ 0.25
Col6a1Q04857 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC16.6■□□□□ 0.25
Col6a1Q04857 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col6a1Q04857 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col6a1Q04857 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Col6a1Q04857 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC16.6■□□□□ 0.25
Col6a1Q04857 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col6a1Q04857 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col6a1Q04857 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col6a1Q04857 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Col6a1Q04857 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col6a1Q04857 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col6a1Q04857 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col6a1Q04857 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col6a1Q04857 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col6a1Q04857 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
Col6a1Q04857 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC16.6■□□□□ 0.25
Col6a1Q04857 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col6a1Q04857 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col6a1Q04857 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col6a1Q04857 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC16.59■□□□□ 0.25
Col6a1Q04857 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col6a1Q04857 Ccdc166-201ENSMUST00000182172 2584 ntBASIC16.59■□□□□ 0.25
Col6a1Q04857 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Col6a1Q04857 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col6a1Q04857 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC16.59■□□□□ 0.25
Col6a1Q04857 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col6a1Q04857 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
Col6a1Q04857 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
Col6a1Q04857 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Col6a1Q04857 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col6a1Q04857 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC16.59■□□□□ 0.25
Col6a1Q04857 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC16.59■□□□□ 0.25
Col6a1Q04857 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col6a1Q04857 Gm42473-201ENSMUST00000201056 2291 ntBASIC16.59■□□□□ 0.25
Col6a1Q04857 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col6a1Q04857 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col6a1Q04857 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col6a1Q04857 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col6a1Q04857 Gm44616-201ENSMUST00000206417 1732 ntBASIC16.59■□□□□ 0.25
Col6a1Q04857 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col6a1Q04857 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
Col6a1Q04857 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col6a1Q04857 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col6a1Q04857 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col6a1Q04857 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col6a1Q04857 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col6a1Q04857 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC16.58■□□□□ 0.25
Col6a1Q04857 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
Col6a1Q04857 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Col6a1Q04857 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col6a1Q04857 Gm2810-201ENSMUST00000118681 990 ntBASIC16.58■□□□□ 0.24
Col6a1Q04857 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col6a1Q04857 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Col6a1Q04857 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC16.58■□□□□ 0.24
Col6a1Q04857 Cdk7-205ENSMUST00000225990 1159 ntBASIC16.58■□□□□ 0.24
Col6a1Q04857 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col6a1Q04857 AC025913.2-201ENSMUST00000220136 1766 ntBASIC16.58■□□□□ 0.24
Col6a1Q04857 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Col6a1Q04857 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col6a1Q04857 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col6a1Q04857 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Col6a1Q04857 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col6a1Q04857 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms