Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC17.45■□□□□ 0.38
Col1a1P11087 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col1a1P11087 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col1a1P11087 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC17.44■□□□□ 0.38
Col1a1P11087 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col1a1P11087 Gm13829-201ENSMUST00000119600 138 ntBASIC17.44■□□□□ 0.38
Col1a1P11087 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC17.44■□□□□ 0.38
Col1a1P11087 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col1a1P11087 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC17.44■□□□□ 0.38
Col1a1P11087 Gm28760-201ENSMUST00000185995 736 ntBASIC17.44■□□□□ 0.38
Col1a1P11087 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC17.44■□□□□ 0.38
Col1a1P11087 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Col1a1P11087 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col1a1P11087 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC17.44■□□□□ 0.38
Col1a1P11087 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col1a1P11087 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col1a1P11087 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col1a1P11087 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Col1a1P11087 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col1a1P11087 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC17.44■□□□□ 0.38
Col1a1P11087 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col1a1P11087 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col1a1P11087 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC17.44■□□□□ 0.38
Col1a1P11087 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC17.44■□□□□ 0.38
Col1a1P11087 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col1a1P11087 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Col1a1P11087 Gm9797-201ENSMUST00000052902 613 ntBASIC17.44■□□□□ 0.38
Col1a1P11087 Mxra8os-201ENSMUST00000097740 687 ntBASIC17.44■□□□□ 0.38
Col1a1P11087 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col1a1P11087 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col1a1P11087 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col1a1P11087 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Col1a1P11087 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col1a1P11087 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col1a1P11087 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col1a1P11087 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col1a1P11087 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col1a1P11087 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
Col1a1P11087 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC17.43■□□□□ 0.38
Col1a1P11087 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col1a1P11087 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC17.43■□□□□ 0.38
Col1a1P11087 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC17.43■□□□□ 0.38
Col1a1P11087 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC17.43■□□□□ 0.38
Col1a1P11087 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col1a1P11087 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col1a1P11087 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC17.43■□□□□ 0.38
Col1a1P11087 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Col1a1P11087 Gm26917-202ENSMUST00000192833 3329 ntBASIC17.43■□□□□ 0.38
Col1a1P11087 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col1a1P11087 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Col1a1P11087 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Col1a1P11087 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Col1a1P11087 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col1a1P11087 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col1a1P11087 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col1a1P11087 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col1a1P11087 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Col1a1P11087 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Col1a1P11087 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col1a1P11087 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col1a1P11087 Gm11918-201ENSMUST00000121660 179 ntBASIC17.42■□□□□ 0.38
Col1a1P11087 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Col1a1P11087 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC17.42■□□□□ 0.38
Col1a1P11087 Gm31326-201ENSMUST00000191856 1048 ntBASIC17.42■□□□□ 0.38
Col1a1P11087 Gm10766-202ENSMUST00000194123 606 ntBASIC17.42■□□□□ 0.38
Col1a1P11087 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col1a1P11087 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC17.42■□□□□ 0.38
Col1a1P11087 Gm9899-201ENSMUST00000065519 555 ntBASIC17.42■□□□□ 0.38
Col1a1P11087 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col1a1P11087 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col1a1P11087 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col1a1P11087 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col1a1P11087 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col1a1P11087 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col1a1P11087 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col1a1P11087 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col1a1P11087 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Col1a1P11087 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col1a1P11087 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col1a1P11087 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col1a1P11087 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col1a1P11087 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col1a1P11087 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col1a1P11087 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC17.41■□□□□ 0.38
Col1a1P11087 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC17.41■□□□□ 0.38
Col1a1P11087 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col1a1P11087 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col1a1P11087 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Col1a1P11087 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col1a1P11087 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC17.41■□□□□ 0.38
Col1a1P11087 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col1a1P11087 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Col1a1P11087 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col1a1P11087 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col1a1P11087 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col1a1P11087 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col1a1P11087 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
Col1a1P11087 Tfap2a-203ENSMUST00000223869 2037 ntBASIC17.41■□□□□ 0.38
Col1a1P11087 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col1a1P11087 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC17.4■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms