Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm16476-201ENSMUST00000221544 139 ntBASIC17.8■□□□□ 0.44
Col3a1P08121 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col3a1P08121 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col3a1P08121 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC17.8■□□□□ 0.44
Col3a1P08121 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Col3a1P08121 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col3a1P08121 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col3a1P08121 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col3a1P08121 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col3a1P08121 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Col3a1P08121 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC17.79■□□□□ 0.44
Col3a1P08121 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col3a1P08121 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col3a1P08121 CT010478.1-201ENSMUST00000220747 2787 ntBASIC17.79■□□□□ 0.44
Col3a1P08121 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Col3a1P08121 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col3a1P08121 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC17.79■□□□□ 0.44
Col3a1P08121 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Col3a1P08121 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col3a1P08121 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col3a1P08121 Gm6222-201ENSMUST00000120787 396 ntBASIC17.79■□□□□ 0.44
Col3a1P08121 Gm11424-201ENSMUST00000121929 829 ntBASIC17.79■□□□□ 0.44
Col3a1P08121 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC17.79■□□□□ 0.44
Col3a1P08121 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col3a1P08121 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC17.79■□□□□ 0.44
Col3a1P08121 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col3a1P08121 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col3a1P08121 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC17.79■□□□□ 0.44
Col3a1P08121 AC090659.2-201ENSMUST00000225378 1186 ntBASIC17.79■□□□□ 0.44
Col3a1P08121 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col3a1P08121 AC124751.1-201ENSMUST00000222716 1408 ntBASIC17.79■□□□□ 0.44
Col3a1P08121 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col3a1P08121 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Col3a1P08121 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col3a1P08121 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC17.79■□□□□ 0.44
Col3a1P08121 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col3a1P08121 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Col3a1P08121 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col3a1P08121 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col3a1P08121 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col3a1P08121 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Col3a1P08121 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Col3a1P08121 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Col3a1P08121 Gm27989-201ENSMUST00000184721 107 ntBASIC17.78■□□□□ 0.44
Col3a1P08121 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC17.78■□□□□ 0.44
Col3a1P08121 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col3a1P08121 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col3a1P08121 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC17.78■□□□□ 0.44
Col3a1P08121 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Col3a1P08121 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col3a1P08121 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col3a1P08121 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col3a1P08121 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col3a1P08121 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Col3a1P08121 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC17.78■□□□□ 0.44
Col3a1P08121 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Col3a1P08121 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col3a1P08121 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col3a1P08121 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col3a1P08121 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col3a1P08121 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC17.77■□□□□ 0.44
Col3a1P08121 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Col3a1P08121 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col3a1P08121 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Col3a1P08121 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
Col3a1P08121 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC17.77■□□□□ 0.44
Col3a1P08121 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC17.77■□□□□ 0.44
Col3a1P08121 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Col3a1P08121 Gm43703-201ENSMUST00000200523 763 ntBASIC17.77■□□□□ 0.44
Col3a1P08121 Shd-206ENSMUST00000225145 998 ntBASIC17.77■□□□□ 0.44
Col3a1P08121 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col3a1P08121 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col3a1P08121 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Col3a1P08121 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col3a1P08121 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col3a1P08121 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col3a1P08121 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Col3a1P08121 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col3a1P08121 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col3a1P08121 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col3a1P08121 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
Col3a1P08121 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col3a1P08121 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col3a1P08121 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col3a1P08121 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col3a1P08121 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Col3a1P08121 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Col3a1P08121 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Col3a1P08121 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col3a1P08121 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC17.76■□□□□ 0.43
Col3a1P08121 Gm15653-201ENSMUST00000119247 907 ntBASIC17.76■□□□□ 0.43
Col3a1P08121 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
Col3a1P08121 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Col3a1P08121 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms