Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
Hmgb3O54879 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
Hmgb3O54879 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Hmgb3O54879 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Hmgb3O54879 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Gm13168-201ENSMUST00000121771 632 ntBASIC12.48□□□□□ -0.41
Hmgb3O54879 Gm10653-202ENSMUST00000139570 835 ntBASIC12.48□□□□□ -0.41
Hmgb3O54879 Gm29994-201ENSMUST00000195495 1193 ntBASIC12.48□□□□□ -0.41
Hmgb3O54879 Gm21814-202ENSMUST00000203277 873 ntBASIC12.48□□□□□ -0.41
Hmgb3O54879 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Gm44291-201ENSMUST00000203102 2865 ntBASIC12.48□□□□□ -0.41
Hmgb3O54879 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC12.48□□□□□ -0.41
Hmgb3O54879 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Hmgb3O54879 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC12.48□□□□□ -0.41
Hmgb3O54879 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
Hmgb3O54879 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hmgb3O54879 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Hmgb3O54879 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Hmgb3O54879 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC12.47□□□□□ -0.41
Hmgb3O54879 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
Hmgb3O54879 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
Hmgb3O54879 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC12.47□□□□□ -0.41
Hmgb3O54879 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC12.47□□□□□ -0.41
Hmgb3O54879 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC12.47□□□□□ -0.41
Hmgb3O54879 Gm2274-201ENSMUST00000184539 609 ntBASIC12.47□□□□□ -0.41
Hmgb3O54879 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC12.47□□□□□ -0.41
Hmgb3O54879 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Hmgb3O54879 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC12.47□□□□□ -0.41
Hmgb3O54879 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Thsd4-202ENSMUST00000098660 8796 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Hmgb3O54879 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hmgb3O54879 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 51.4 ms