Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Clp1Q99LI9 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Gm4204-201ENSMUST00000110798 1231 ntBASIC15.82■□□□□ 0.12
Clp1Q99LI9 Gm14928-201ENSMUST00000120198 477 ntBASIC15.82■□□□□ 0.12
Clp1Q99LI9 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC15.82■□□□□ 0.12
Clp1Q99LI9 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Gm6263-201ENSMUST00000120029 1342 ntBASIC15.82■□□□□ 0.12
Clp1Q99LI9 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Clp1Q99LI9 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Clp1Q99LI9 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Clp1Q99LI9 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
Clp1Q99LI9 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Clp1Q99LI9 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Clp1Q99LI9 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC15.81■□□□□ 0.12
Clp1Q99LI9 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Clp1Q99LI9 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC15.81■□□□□ 0.12
Clp1Q99LI9 Gm6756-201ENSMUST00000180647 1620 ntBASIC15.81■□□□□ 0.12
Clp1Q99LI9 Gm18187-201ENSMUST00000196476 984 ntBASIC15.81■□□□□ 0.12
Clp1Q99LI9 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Clp1Q99LI9 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC15.81■□□□□ 0.12
Clp1Q99LI9 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC15.81■□□□□ 0.12
Clp1Q99LI9 AC164565.1-201ENSMUST00000217520 1484 ntBASIC15.81■□□□□ 0.12
Clp1Q99LI9 Gm6218-201ENSMUST00000219812 628 ntBASIC15.81■□□□□ 0.12
Clp1Q99LI9 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Clp1Q99LI9 AC154239.3-201ENSMUST00000226933 674 ntBASIC15.81■□□□□ 0.12
Clp1Q99LI9 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Clp1Q99LI9 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Clp1Q99LI9 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Clp1Q99LI9 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Clp1Q99LI9 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Clp1Q99LI9 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
Clp1Q99LI9 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Clp1Q99LI9 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Clp1Q99LI9 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Clp1Q99LI9 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC15.8■□□□□ 0.12
Clp1Q99LI9 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Clp1Q99LI9 AC130829.1-201ENSMUST00000221548 494 ntBASIC15.8■□□□□ 0.12
Clp1Q99LI9 AC132467.2-202ENSMUST00000227726 559 ntBASIC15.8■□□□□ 0.12
Clp1Q99LI9 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC15.8■□□□□ 0.12
Clp1Q99LI9 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clp1Q99LI9 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clp1Q99LI9 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clp1Q99LI9 Gm42473-201ENSMUST00000201056 2291 ntBASIC15.79■□□□□ 0.12
Clp1Q99LI9 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Clp1Q99LI9 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Clp1Q99LI9 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clp1Q99LI9 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Clp1Q99LI9 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
Clp1Q99LI9 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clp1Q99LI9 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clp1Q99LI9 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clp1Q99LI9 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clp1Q99LI9 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clp1Q99LI9 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clp1Q99LI9 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 58.5 ms