Protein–RNA interactions for Protein: Q8BL06

Usp54, Inactive ubiquitin carboxyl-terminal hydrolase 54, mousemouse

Known RBP Predictions only

Length 1,588 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp54Q8BL06 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp54Q8BL06 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Usp54Q8BL06 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp54Q8BL06 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp54Q8BL06 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp54Q8BL06 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC21.16■□□□□ 0.98
Usp54Q8BL06 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Usp54Q8BL06 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp54Q8BL06 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp54Q8BL06 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Usp54Q8BL06 Gm11478-201ENSMUST00000117851 599 ntBASIC21.15■□□□□ 0.98
Usp54Q8BL06 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC21.15■□□□□ 0.98
Usp54Q8BL06 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC21.15■□□□□ 0.98
Usp54Q8BL06 Gm9182-201ENSMUST00000217829 639 ntBASIC21.15■□□□□ 0.98
Usp54Q8BL06 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Usp54Q8BL06 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp54Q8BL06 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC21.15■□□□□ 0.98
Usp54Q8BL06 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp54Q8BL06 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Usp54Q8BL06 Gm9115-201ENSMUST00000120192 1348 ntBASIC21.15■□□□□ 0.98
Usp54Q8BL06 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC21.15■□□□□ 0.98
Usp54Q8BL06 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp54Q8BL06 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp54Q8BL06 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Usp54Q8BL06 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp54Q8BL06 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Usp54Q8BL06 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC21.14■□□□□ 0.98
Usp54Q8BL06 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
Usp54Q8BL06 Mir7085-201ENSMUST00000184353 66 ntBASIC21.14■□□□□ 0.98
Usp54Q8BL06 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC21.14■□□□□ 0.98
Usp54Q8BL06 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Usp54Q8BL06 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
Usp54Q8BL06 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC21.14■□□□□ 0.98
Usp54Q8BL06 Gm21009-201ENSMUST00000197169 1669 ntBASIC21.14■□□□□ 0.98
Usp54Q8BL06 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usp54Q8BL06 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usp54Q8BL06 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usp54Q8BL06 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usp54Q8BL06 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Usp54Q8BL06 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Usp54Q8BL06 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Usp54Q8BL06 Gm6916-202ENSMUST00000205523 195 ntBASIC21.14■□□□□ 0.97
Usp54Q8BL06 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Usp54Q8BL06 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Usp54Q8BL06 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC21.14■□□□□ 0.97
Usp54Q8BL06 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usp54Q8BL06 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usp54Q8BL06 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Gm11839-201ENSMUST00000120647 1953 ntBASIC21.13■□□□□ 0.97
Usp54Q8BL06 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC21.13■□□□□ 0.97
Usp54Q8BL06 Ldha-ps-201ENSMUST00000119390 995 ntBASIC21.13■□□□□ 0.97
Usp54Q8BL06 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC21.13■□□□□ 0.97
Usp54Q8BL06 AC121598.1-201ENSMUST00000228224 1019 ntBASIC21.13■□□□□ 0.97
Usp54Q8BL06 AC123645.1-201ENSMUST00000228469 605 ntBASIC21.13■□□□□ 0.97
Usp54Q8BL06 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC21.13■□□□□ 0.97
Usp54Q8BL06 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp54Q8BL06 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC21.12■□□□□ 0.97
Usp54Q8BL06 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC21.12■□□□□ 0.97
Usp54Q8BL06 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Usp54Q8BL06 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms