Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Mir7036b-201ENSMUST00000184791 63 ntBASIC15.2■□□□□ 0.02
Six4Q61321 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC15.2■□□□□ 0.02
Six4Q61321 Thap2-203ENSMUST00000218989 527 ntBASIC15.2■□□□□ 0.02
Six4Q61321 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Six4Q61321 Gm10313-201ENSMUST00000095320 1002 ntBASIC15.2■□□□□ 0.02
Six4Q61321 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Six4Q61321 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC15.2■□□□□ 0.02
Six4Q61321 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Six4Q61321 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Six4Q61321 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Six4Q61321 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC15.2■□□□□ 0.02
Six4Q61321 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Six4Q61321 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC15.19■□□□□ 0.02
Six4Q61321 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC15.19■□□□□ 0.02
Six4Q61321 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
Six4Q61321 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC15.19■□□□□ 0.02
Six4Q61321 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC15.19■□□□□ 0.02
Six4Q61321 Gm5264-201ENSMUST00000190584 848 ntBASIC15.19■□□□□ 0.02
Six4Q61321 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC15.19■□□□□ 0.02
Six4Q61321 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Gm10175-201ENSMUST00000086013 645 ntBASIC15.19■□□□□ 0.02
Six4Q61321 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC15.19■□□□□ 0.02
Six4Q61321 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC15.19■□□□□ 0.02
Six4Q61321 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC15.19■□□□□ 0.02
Six4Q61321 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Six4Q61321 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Six4Q61321 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC15.18■□□□□ 0.02
Six4Q61321 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Six4Q61321 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC15.18■□□□□ 0.02
Six4Q61321 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Six4Q61321 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Six4Q61321 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Six4Q61321 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Six4Q61321 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Six4Q61321 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Six4Q61321 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Six4Q61321 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Six4Q61321 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC15.18■□□□□ 0.02
Six4Q61321 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC15.18■□□□□ 0.02
Six4Q61321 Mir3113-201ENSMUST00000175478 76 ntBASIC15.18■□□□□ 0.02
Six4Q61321 Gm44492-201ENSMUST00000197012 141 ntBASIC15.18■□□□□ 0.02
Six4Q61321 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC15.18■□□□□ 0.02
Six4Q61321 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC15.18■□□□□ 0.02
Six4Q61321 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC15.18■□□□□ 0.02
Six4Q61321 Bloc1s5-203ENSMUST00000224902 612 ntBASIC15.18■□□□□ 0.02
Six4Q61321 AC154572.2-201ENSMUST00000225105 997 ntBASIC15.18■□□□□ 0.02
Six4Q61321 Mxra8os-201ENSMUST00000097740 687 ntBASIC15.18■□□□□ 0.02
Six4Q61321 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Six4Q61321 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Six4Q61321 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Six4Q61321 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC15.18■□□□□ 0.02
Six4Q61321 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
Six4Q61321 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Six4Q61321 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC15.18■□□□□ 0.02
Six4Q61321 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Six4Q61321 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Six4Q61321 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Six4Q61321 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC15.17■□□□□ 0.02
Six4Q61321 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Six4Q61321 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Six4Q61321 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
Six4Q61321 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Six4Q61321 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Six4Q61321 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Six4Q61321 Gm12892-201ENSMUST00000117367 1146 ntBASIC15.17■□□□□ 0.02
Six4Q61321 Gm9385-201ENSMUST00000117563 472 ntBASIC15.17■□□□□ 0.02
Six4Q61321 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Six4Q61321 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Six4Q61321 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC15.17■□□□□ 0.02
Six4Q61321 Gm8000-201ENSMUST00000188378 592 ntBASIC15.17■□□□□ 0.02
Six4Q61321 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Six4Q61321 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 50.7 ms