Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC14.65□□□□□ -0.06
Col28a1Q2UY11 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col28a1Q2UY11 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.07
Col28a1Q2UY11 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Gm43509-201ENSMUST00000196551 2594 ntBASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Gm14722-201ENSMUST00000118943 689 ntBASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Gm45546-201ENSMUST00000211053 2394 ntBASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col28a1Q2UY11 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 AC159301.1-201ENSMUST00000225130 1182 ntBASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Gm38318-201ENSMUST00000195769 1706 ntBASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col28a1Q2UY11 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms