Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Nkx3-1P97436 Gm6973-201ENSMUST00000117080 721 ntBASIC13.02□□□□□ -0.33
Nkx3-1P97436 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Nkx3-1P97436 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC13.02□□□□□ -0.33
Nkx3-1P97436 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Nkx3-1P97436 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.33
Nkx3-1P97436 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC13.02□□□□□ -0.33
Nkx3-1P97436 Gm13127-201ENSMUST00000118978 1389 ntBASIC13.02□□□□□ -0.33
Nkx3-1P97436 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Nkx3-1P97436 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Nkx3-1P97436 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Nkx3-1P97436 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Nkx3-1P97436 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC13.02□□□□□ -0.33
Nkx3-1P97436 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Nkx3-1P97436 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Nkx3-1P97436 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Nkx3-1P97436 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx3-1P97436 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC13.01□□□□□ -0.33
Nkx3-1P97436 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Gm25287-201ENSMUST00000103846 110 ntBASIC13.01□□□□□ -0.33
Nkx3-1P97436 Gm22918-201ENSMUST00000103855 110 ntBASIC13.01□□□□□ -0.33
Nkx3-1P97436 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Gm5779-201ENSMUST00000218467 910 ntBASIC13.01□□□□□ -0.33
Nkx3-1P97436 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx3-1P97436 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx3-1P97436 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx3-1P97436 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC13□□□□□ -0.33
Nkx3-1P97436 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx3-1P97436 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx3-1P97436 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx3-1P97436 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx3-1P97436 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx3-1P97436 Gm45293-201ENSMUST00000209754 1812 ntBASIC13□□□□□ -0.33
Nkx3-1P97436 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
Nkx3-1P97436 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx3-1P97436 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx3-1P97436 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC13□□□□□ -0.33
Nkx3-1P97436 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC13□□□□□ -0.33
Nkx3-1P97436 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx3-1P97436 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Nkx3-1P97436 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx3-1P97436 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx3-1P97436 AC154767.3-201ENSMUST00000225150 1342 ntBASIC13□□□□□ -0.33
Nkx3-1P97436 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx3-1P97436 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC13□□□□□ -0.33
Nkx3-1P97436 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC13□□□□□ -0.33
Nkx3-1P97436 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC13□□□□□ -0.33
Nkx3-1P97436 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC13□□□□□ -0.33
Nkx3-1P97436 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Nkx3-1P97436 CT010506.4-201ENSMUST00000225457 351 ntBASIC13□□□□□ -0.33
Nkx3-1P97436 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx3-1P97436 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx3-1P97436 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx3-1P97436 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC13□□□□□ -0.33
Nkx3-1P97436 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx3-1P97436 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx3-1P97436 Gm19430-201ENSMUST00000193847 2137 ntBASIC13□□□□□ -0.33
Nkx3-1P97436 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Nkx3-1P97436 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC13□□□□□ -0.33
Nkx3-1P97436 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Gm7336-201ENSMUST00000107041 1232 ntBASIC12.99□□□□□ -0.33
Nkx3-1P97436 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Gm11543-201ENSMUST00000120758 370 ntBASIC12.99□□□□□ -0.33
Nkx3-1P97436 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Gm27622-201ENSMUST00000183779 60 ntBASIC12.99□□□□□ -0.33
Nkx3-1P97436 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms