Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC12.21□□□□□ -0.46
Cdx1P18111 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Cdx1P18111 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.46
Cdx1P18111 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Cdx1P18111 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.46
Cdx1P18111 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
Cdx1P18111 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Cdx1P18111 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Cdx1P18111 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
Cdx1P18111 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC12.2□□□□□ -0.46
Cdx1P18111 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Cdx1P18111 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC12.2□□□□□ -0.46
Cdx1P18111 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC12.2□□□□□ -0.46
Cdx1P18111 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Cdx1P18111 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC12.2□□□□□ -0.46
Cdx1P18111 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC12.2□□□□□ -0.46
Cdx1P18111 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC12.2□□□□□ -0.46
Cdx1P18111 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Cdx1P18111 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC12.2□□□□□ -0.46
Cdx1P18111 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdx1P18111 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC12.19□□□□□ -0.46
Cdx1P18111 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC12.19□□□□□ -0.46
Cdx1P18111 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Cdx1P18111 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Cdx1P18111 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC12.19□□□□□ -0.46
Cdx1P18111 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC12.19□□□□□ -0.46
Cdx1P18111 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC12.19□□□□□ -0.46
Cdx1P18111 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Cdx1P18111 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC12.19□□□□□ -0.46
Cdx1P18111 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx1P18111 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx1P18111 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx1P18111 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx1P18111 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Cdx1P18111 AC148324.1-201ENSMUST00000219034 4240 ntBASIC12.18□□□□□ -0.46
Cdx1P18111 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx1P18111 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Cdx1P18111 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx1P18111 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx1P18111 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx1P18111 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx1P18111 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC12.18□□□□□ -0.46
Cdx1P18111 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx1P18111 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx1P18111 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms